Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V5E96_RS18590 Genome accession   NZ_CP151175
Coordinates   4014993..4015418 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 3860P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4009993..4020418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5E96_RS18570 (V5E96_018570) ileS 4010150..4012981 (+) 2832 WP_003112822.1 isoleucine--tRNA ligase -
  V5E96_RS18575 (V5E96_018575) lspA 4012974..4013483 (+) 510 WP_003112823.1 signal peptidase II -
  V5E96_RS18580 (V5E96_018580) fkpB 4013476..4013916 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  V5E96_RS18585 (V5E96_018585) ispH 4014002..4014946 (+) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  V5E96_RS18590 (V5E96_018590) comF 4014993..4015418 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  V5E96_RS18595 (V5E96_018595) pilY2 4015415..4015762 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  V5E96_RS18600 (V5E96_018600) pilY1 4015764..4019249 (-) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  V5E96_RS18605 (V5E96_018605) pilX 4019261..4019848 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=884722 V5E96_RS18590 WP_003094721.1 4014993..4015418(-) (comF) [Pseudomonas aeruginosa strain 3860P]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=884722 V5E96_RS18590 WP_003094721.1 4014993..4015418(-) (comF) [Pseudomonas aeruginosa strain 3860P]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383