Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RMQ62_RS05005 Genome accession   NZ_CP135065
Coordinates   1054159..1054452 (-) Length   97 a.a.
NCBI ID   WP_024401507.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049159..1059452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS04980 (RMQ62_04980) - 1050235..1050786 (-) 552 WP_044680793.1 folate family ECF transporter S component -
  RMQ62_RS04985 (RMQ62_04985) - 1051103..1052290 (-) 1188 WP_044680792.1 acetate kinase -
  RMQ62_RS04990 (RMQ62_04990) comYH 1052340..1053293 (-) 954 WP_024401509.1 class I SAM-dependent methyltransferase Machinery gene
  RMQ62_RS04995 (RMQ62_04995) comGG 1053350..1053760 (-) 411 WP_024401508.1 competence type IV pilus minor pilin ComGG -
  RMQ62_RS05000 (RMQ62_05000) comGF/cglF 1053738..1054172 (-) 435 WP_024389483.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMQ62_RS05005 (RMQ62_05005) comYE 1054159..1054452 (-) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMQ62_RS05010 (RMQ62_05010) comGD 1054424..1054831 (-) 408 WP_074391329.1 competence type IV pilus minor pilin ComGD -
  RMQ62_RS05015 (RMQ62_05015) comYC 1054812..1055093 (-) 282 WP_074391328.1 competence type IV pilus major pilin ComGC Machinery gene
  RMQ62_RS05020 (RMQ62_05020) comYB 1055095..1056132 (-) 1038 WP_269472402.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMQ62_RS05025 (RMQ62_05025) comYA 1056044..1056994 (-) 951 WP_313741731.1 competence type IV pilus ATPase ComGA Machinery gene
  RMQ62_RS05030 (RMQ62_05030) - 1057080..1058030 (+) 951 WP_313741732.1 LD-carboxypeptidase -
  RMQ62_RS05035 (RMQ62_05035) - 1058065..1058430 (-) 366 WP_024395451.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10799.68 Da        Isoelectric Point: 9.0978

>NTDB_id=884722 RMQ62_RS05005 WP_024401507.1 1054159..1054452(-) (comYE) [Streptococcus suis strain ID24665]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=884722 RMQ62_RS05005 WP_024401507.1 1054159..1054452(-) (comYE) [Streptococcus suis strain ID24665]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGCAGTTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGAGCAAGATAACTTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTCTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

100

0.546
  comYE Streptococcus mutans UA159

54.639

100

0.546
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371