Detailed information NTG0884721

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RMQ62_RS05000
• Genome accession: NZ_CP135065
• Coordinates: 1053738..1054172 (-)
• Length: 144 a.a.
• NCBI ID: WP_024389483.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID24665
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1048738..1059172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ62_RS04975 (RMQ62_04975)	-	1048923..1050179 (-)	1257	WP_074391333.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
RMQ62_RS04980 (RMQ62_04980)	-	1050235..1050786 (-)	552	WP_044680793.1	folate family ECF transporter S component	-
RMQ62_RS04985 (RMQ62_04985)	-	1051103..1052290 (-)	1188	WP_044680792.1	acetate kinase	-
RMQ62_RS04990 (RMQ62_04990)	comYH	1052340..1053293 (-)	954	WP_024401509.1	class I SAM-dependent methyltransferase	Machinery gene
RMQ62_RS04995 (RMQ62_04995)	comGG	1053350..1053760 (-)	411	WP_024401508.1	competence type IV pilus minor pilin ComGG	-
RMQ62_RS05000 (RMQ62_05000)	comGF/cglF	1053738..1054172 (-)	435	WP_024389483.1	competence type IV pilus minor pilin ComGF	Machinery gene
RMQ62_RS05005 (RMQ62_05005)	comYE	1054159..1054452 (-)	294	WP_024401507.1	competence type IV pilus minor pilin ComGE	Machinery gene
RMQ62_RS05010 (RMQ62_05010)	comGD	1054424..1054831 (-)	408	WP_074391329.1	competence type IV pilus minor pilin ComGD	-
RMQ62_RS05015 (RMQ62_05015)	comYC	1054812..1055093 (-)	282	WP_074391328.1	competence type IV pilus major pilin ComGC	Machinery gene
RMQ62_RS05020 (RMQ62_05020)	comYB	1055095..1056132 (-)	1038	WP_269472402.1	competence type IV pilus assembly protein ComGB	Machinery gene
RMQ62_RS05025 (RMQ62_05025)	comYA	1056044..1056994 (-)	951	WP_313741731.1	competence type IV pilus ATPase ComGA	Machinery gene
RMQ62_RS05030 (RMQ62_05030)	-	1057080..1058030 (+)	951	WP_313741732.1	LD-carboxypeptidase	-
RMQ62_RS05035 (RMQ62_05035)	-	1058065..1058430 (-)	366	WP_024395451.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16421.71 Da
• Isoelectric Point: 6.9827

>NTDB_id=884721 RMQ62_RS05000 WP_024389483.1 1053738..1054172(-) (comGF/cglF) [Streptococcus suis strain ID24665]
MLKSKIPAFTLLECLVALVILSGSLLVFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQSELVKVENGKVYVNKDG
QALAFGKSRSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide

• Length: 435 bp

>NTDB_id=884721 RMQ62_RS05000 WP_024389483.1 1053738..1054172(-) (comGF/cglF) [Streptococcus suis strain ID24665]
TTGTTAAAAAGTAAAATTCCTGCTTTTACTCTCTTGGAATGCTTGGTAGCCTTAGTCATCCTATCAGGAAGTCTTCTGGT
CTTTGAAGGCTTGTCAAAACTGCTGGTCCAAGAAGCACATTACCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGTCAATTGCGGTCGGAGTGGGACCAGTCGGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAATAAGGATGGA
CAAGCGTTAGCCTTTGGCAAGTCACGTTCGGATGATTTTCGGAAAACAAATGATAGGGGACAGGGTTACCAGCCCATGCT
CTATCAAGTGGATAGCGCAGCTATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GGACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae TIGR4	55.319	97.917	0.542
comGF/cglF	Streptococcus pneumoniae Rx1	55.319	97.917	0.542
comGF/cglF	Streptococcus pneumoniae D39	55.319	97.917	0.542
comGF/cglF	Streptococcus pneumoniae R6	55.319	97.917	0.542
comGF/cglF	Streptococcus mitis NCTC 12261	55.97	93.056	0.521
comYF	Streptococcus mutans UA140	50	100	0.5
comYF	Streptococcus mutans UA159	49.306	100	0.493
comGF/cglF	Streptococcus mitis SK321	52.985	93.056	0.493
comGF	Lactococcus lactis subsp. cremoris KW2	46.809	97.917	0.458