Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ViNHUV68_RS00170 Genome accession   NZ_CP134975
Coordinates   36812..37930 (+) Length   372 a.a.
NCBI ID   WP_391088750.1    Uniprot ID   -
Organism   Vibrio sp. NH-UV-68     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 31812..42930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ViNHUV68_RS00150 (ViNHUV68_00290) trkA 32303..33679 (-) 1377 WP_038175845.1 Trk system potassium transporter TrkA -
  ViNHUV68_RS00155 (ViNHUV68_00300) rsmB 33735..35015 (-) 1281 WP_391088744.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ViNHUV68_RS00160 (ViNHUV68_00310) fmt 35087..36034 (-) 948 WP_391088746.1 methionyl-tRNA formyltransferase -
  ViNHUV68_RS00165 (ViNHUV68_00320) def 36067..36579 (-) 513 WP_038175850.1 peptide deformylase -
  ViNHUV68_RS00170 (ViNHUV68_00330) dprA 36812..37930 (+) 1119 WP_391088750.1 DNA-processing protein DprA Machinery gene
  ViNHUV68_RS00175 (ViNHUV68_00340) - 37933..38412 (+) 480 WP_038175854.1 DUF494 family protein -
  ViNHUV68_RS00180 (ViNHUV68_00350) - 38429..39010 (+) 582 WP_038175855.1 type I DNA topoisomerase -
  ViNHUV68_RS00185 (ViNHUV68_00360) - 39049..40182 (-) 1134 WP_391088752.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ViNHUV68_RS00190 (ViNHUV68_00370) purE 40187..40672 (-) 486 WP_391088756.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ViNHUV68_RS00195 (ViNHUV68_00380) - 40865..41422 (+) 558 WP_391088758.1 L-threonylcarbamoyladenylate synthase -
  ViNHUV68_RS00200 (ViNHUV68_00390) hemF 41447..42364 (+) 918 WP_038175862.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39929.72 Da        Isoelectric Point: 6.5694

>NTDB_id=884368 ViNHUV68_RS00170 WP_391088750.1 36812..37930(+) (dprA) [Vibrio sp. NH-UV-68]
MFDQQLSAWLALYFTPGIGPKSFAKLIARDAPLNIVNASAQSMQALGLNAAQIQFLKHQAHTQVEQCLEWQSADTNQHIV
TLDDVRYPDLLRQAASVPAVLFVKGDPSALALPQIAIVGSRNASVDALNSARDFAVRLVEHQLAVTSGLALGADGYAHDG
ALQAGGVTLAVLGCGLQSVYPARHRDLAQRIVAGGGSLVSEFHPTAKPKADHFPRRNRIISGLSLGVLVVEAAQKSGSLI
TARYALEQGREVFALPGSIHNTQALGCNLLIKQGACLVMTVEDILNEVNSLLDWTNQTHRQIQPPLFEEIEAKQQLPFAS
LLANVGSKATPVDILASRTNIPVQEVMMQLLELELEGHVVAVSGGYIRNERG

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=884368 ViNHUV68_RS00170 WP_391088750.1 36812..37930(+) (dprA) [Vibrio sp. NH-UV-68]
ATGTTTGACCAACAACTCAGTGCATGGCTAGCGCTCTACTTCACCCCCGGCATTGGCCCTAAATCTTTTGCTAAGTTAAT
CGCTCGCGATGCGCCGCTCAATATCGTCAATGCCTCGGCGCAGTCGATGCAAGCGCTTGGGTTAAATGCGGCGCAAATTC
AATTTTTAAAGCATCAAGCGCACACTCAAGTTGAACAATGCCTTGAGTGGCAAAGCGCGGACACCAATCAACACATAGTG
ACGCTTGATGATGTTCGATATCCTGATCTACTTCGCCAAGCCGCTTCTGTACCAGCAGTGCTCTTTGTTAAAGGTGATCC
TAGCGCGCTGGCACTGCCGCAAATTGCGATAGTCGGTAGCCGCAATGCCAGTGTGGATGCGCTTAACAGTGCGCGCGACT
TTGCGGTCCGTTTAGTTGAGCATCAGTTAGCCGTGACCAGTGGCTTGGCGTTGGGCGCTGATGGCTATGCACACGATGGT
GCGCTACAAGCCGGGGGCGTGACGCTTGCGGTGCTAGGTTGCGGGTTACAAAGTGTTTATCCTGCGCGTCATCGCGACTT
AGCGCAGCGAATCGTTGCTGGTGGTGGATCATTGGTTTCTGAGTTTCATCCTACCGCTAAGCCTAAAGCGGATCATTTCC
CGCGTCGTAATCGTATTATTAGTGGTCTCTCGCTGGGGGTATTGGTGGTAGAGGCGGCGCAAAAGAGCGGCTCATTGATT
ACCGCTCGCTATGCCCTTGAGCAAGGGCGAGAAGTTTTTGCCTTGCCAGGTTCAATTCACAACACGCAAGCCTTGGGTTG
TAACTTATTGATTAAACAAGGCGCGTGCTTGGTTATGACGGTTGAAGATATCCTCAATGAAGTTAACTCACTGCTTGATT
GGACCAATCAAACGCATAGACAGATTCAGCCGCCACTGTTTGAGGAAATAGAAGCTAAACAACAATTGCCATTTGCTTCA
CTGTTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTACAAGAAGTCAT
GATGCAGCTCTTGGAGCTTGAGCTCGAAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAATGAGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-365)

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.151

99.731

0.64
  dprA Vibrio cholerae strain A1552

59.14

100

0.591
  dprA Glaesserella parasuis strain SC1401

46.277

100

0.468
  dprA Legionella pneumophila strain ERS1305867

44.324

99.462

0.441
  dprA Neisseria meningitidis MC58

39.698

100

0.425
  dprA Neisseria meningitidis strain C311

39.698

100

0.425
  dprA Neisseria gonorrhoeae MS11

38.191

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

36.296

100

0.395
  dprA Haemophilus influenzae Rd KW20

42.012

90.86

0.382
  dprA Acinetobacter baumannii strain A118

41.42

90.86

0.376
  dprA Acinetobacter baylyi ADP1

39.266

95.161

0.374
  dprA Acinetobacter baumannii D1279779

42.073

88.172

0.371