Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RNI18_RS13325 Genome accession   NZ_CP134775
Coordinates   2670178..2670519 (+) Length   113 a.a.
NCBI ID   WP_222483145.1    Uniprot ID   -
Organism   Bacillus velezensis strain KB21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2665178..2675519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNI18_RS13290 (RNI18_13290) - 2665300..2666097 (+) 798 WP_007614310.1 flagellar hook-basal body protein -
  RNI18_RS13295 (RNI18_13295) - 2666122..2666943 (+) 822 WP_015387588.1 flagellar hook-basal body protein -
  RNI18_RS13300 (RNI18_13300) - 2666961..2668025 (-) 1065 WP_003151240.1 tetratricopeptide repeat protein -
  RNI18_RS13305 (RNI18_13305) fabZ 2668221..2668646 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RNI18_RS13310 (RNI18_13310) mscL 2668703..2669098 (+) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  RNI18_RS13315 (RNI18_13315) - 2669144..2669554 (-) 411 WP_003151245.1 YwpF-like family protein -
  RNI18_RS13320 (RNI18_13320) - 2669727..2670080 (+) 354 WP_003151247.1 hypothetical protein -
  RNI18_RS13325 (RNI18_13325) ssbB 2670178..2670519 (+) 342 WP_222483145.1 single-stranded DNA-binding protein Machinery gene
  RNI18_RS13330 (RNI18_13330) - 2670729..2671511 (+) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  RNI18_RS13335 (RNI18_13335) - 2671508..2672365 (+) 858 WP_046341445.1 Cof-type HAD-IIB family hydrolase -
  RNI18_RS13340 (RNI18_13340) - 2672478..2675252 (-) 2775 WP_003151255.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12675.55 Da        Isoelectric Point: 9.5812

>NTDB_id=883593 RNI18_RS13325 WP_222483145.1 2670178..2670519(+) (ssbB) [Bacillus velezensis strain KB21]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFINCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=883593 RNI18_RS13325 WP_222483145.1 2670178..2670519(+) (ssbB) [Bacillus velezensis strain KB21]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGATCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
GCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCATCAACTGCACCATCT
GGAGGAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGCTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAGAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.106

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

93.805

0.549
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

93.805

0.504
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.018

100

0.46
  ssbA Streptococcus mutans UA159

41.593

100

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae D39

39.823

100

0.398
  ssbB/cilA Streptococcus pneumoniae R6

39.823

100

0.398
  ssbB/cilA Streptococcus mitis SK321

39.823

100

0.398
  ssbB Lactococcus lactis subsp. cremoris KW2

38.393

99.115

0.381