Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RE409_RS26410 Genome accession   NZ_CP133763
Coordinates   5444317..5444679 (-) Length   120 a.a.
NCBI ID   WP_053348513.1    Uniprot ID   -
Organism   Peribacillus sp. R9-11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5439317..5449679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE409_RS26395 (RE409_26400) - 5440326..5441942 (-) 1617 WP_201187440.1 ABC transporter substrate-binding protein -
  RE409_RS26400 (RE409_26405) - 5441987..5442955 (-) 969 WP_201187441.1 ABC transporter ATP-binding protein -
  RE409_RS26405 (RE409_26410) - 5442936..5443940 (-) 1005 WP_201187442.1 ABC transporter ATP-binding protein -
  RE409_RS26410 (RE409_26415) ssbB 5444317..5444679 (-) 363 WP_053348513.1 single-stranded DNA-binding protein Machinery gene
  RE409_RS26415 (RE409_26420) - 5445065..5445499 (+) 435 WP_201187445.1 YwpF family protein -
  RE409_RS26420 (RE409_26425) - 5445627..5445905 (-) 279 WP_201222610.1 hypothetical protein -
  RE409_RS26425 (RE409_26430) fabZ 5446202..5446630 (-) 429 WP_309558300.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RE409_RS26430 (RE409_26435) - 5446755..5447084 (-) 330 WP_242486080.1 DNA-directed RNA polymerase subunit beta -
  RE409_RS26435 (RE409_26440) - 5447188..5448036 (-) 849 WP_201187448.1 flagellar hook-basal body protein -
  RE409_RS26440 (RE409_26445) - 5448093..5448932 (-) 840 WP_201187450.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13636.61 Da        Isoelectric Point: 9.6563

>NTDB_id=876543 RE409_RS26410 WP_053348513.1 5444317..5444679(-) (ssbB) [Peribacillus sp. R9-11]
MINQITLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGDYEADFVQCIIWKKTAENTAQYCKKGALIGITGRIQTR
RYENQEGKKVYVTEVVAEKVQFIGSKQNDVKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=876543 RE409_RS26410 WP_053348513.1 5444317..5444679(-) (ssbB) [Peribacillus sp. R9-11]
ATGATCAACCAAATTACCCTTGTAGGGAGACTGACGAAGGACCCCGAATTAAGATACACACCGGATGGCAAGGCAGTTTC
CAATATTACGTTAGCGGTTAACCGTAACTTTCGTAATACAGTAGGAGATTATGAGGCGGACTTTGTACAGTGTATCATAT
GGAAAAAGACAGCTGAAAACACCGCTCAGTATTGCAAAAAAGGGGCCTTAATTGGCATTACCGGCAGAATTCAAACGAGG
AGATACGAAAACCAAGAAGGTAAAAAAGTGTATGTCACCGAAGTTGTCGCCGAGAAGGTTCAATTCATAGGATCTAAACA
AAATGATGTTAAGCCAAAGGATTTTGAGCATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.404

95

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

88.333

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

88.333

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

88.333

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

88.333

0.383
  ssbA Streptococcus mutans UA159

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae D39

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae R6

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

42.453

88.333

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

87.5

0.367