Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RFN65_RS02535 Genome accession   NZ_CP133703
Coordinates   490458..490799 (+) Length   113 a.a.
NCBI ID   WP_063334791.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 485458..495799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS02520 (RFN65_02520) - 488650..489288 (+) 639 WP_047183318.1 class A sortase -
  RFN65_RS02525 (RFN65_02525) ywpF 489413..489823 (-) 411 WP_015251046.1 YwpF-like family protein -
  RFN65_RS02530 (RFN65_02530) ywpG 489998..490381 (+) 384 WP_014478204.1 DynA interaction protein YwpG -
  RFN65_RS02535 (RFN65_02535) ssbB 490458..490799 (+) 342 WP_063334791.1 single-stranded DNA-binding protein SsbB Machinery gene
  RFN65_RS02540 (RFN65_02540) glcR 491024..491800 (+) 777 WP_063334790.1 transcriptional regulator GlcR -
  RFN65_RS02545 (RFN65_02545) ywpJ 491806..492663 (+) 858 WP_015384856.1 phosphatase YwpJ -
  RFN65_RS02550 (RFN65_02550) hepAB 492789..495557 (-) 2769 WP_063334789.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12475.19 Da        Isoelectric Point: 9.0177

>NTDB_id=875803 RFN65_RS02535 WP_063334791.1 490458..490799(+) (ssbB) [Bacillus subtilis strain CP35]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIKADYVNCTLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=875803 RFN65_RS02535 WP_063334791.1 490458..490799(+) (ssbB) [Bacillus subtilis strain CP35]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGTTTCAAGAATGCTTCAGGCGAAATCAAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

97.345

100

0.973
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389