Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   RDV54_RS08975 Genome accession   NZ_CP133471
Coordinates   1862621..1863016 (+) Length   131 a.a.
NCBI ID   WP_000282464.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1857621..1868016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08950 (RDV54_08950) - 1859209..1860282 (+) 1074 WP_161969979.1 N-acetylmuramoyl-L-alanine amidase family protein -
  RDV54_RS08955 (RDV54_08955) - 1860487..1860786 (+) 300 WP_001013977.1 DUF4651 domain-containing protein -
  RDV54_RS08960 (RDV54_08960) - 1860783..1861100 (+) 318 WP_000615777.1 thioredoxin family protein -
  RDV54_RS08965 (RDV54_08965) ytpR 1861116..1861742 (+) 627 WP_000578319.1 YtpR family tRNA-binding protein -
  RDV54_RS08970 (RDV54_08970) - 1861784..1862545 (+) 762 WP_000165331.1 SDR family NAD(P)-dependent oxidoreductase -
  RDV54_RS08975 (RDV54_08975) ssbB/cilA 1862621..1863016 (+) 396 WP_000282464.1 single-stranded DNA-binding protein Machinery gene
  RDV54_RS08980 (RDV54_08980) groES 1863172..1863456 (+) 285 WP_000917337.1 co-chaperone GroES -
  RDV54_RS08985 (RDV54_08985) groL 1863472..1865094 (+) 1623 WP_000031580.1 chaperonin GroEL -
  RDV54_RS08990 (RDV54_08990) - 1865232..1865999 (+) 768 WP_000567554.1 epoxyqueuosine reductase QueH -
  RDV54_RS08995 (RDV54_08995) - 1866070..1866603 (-) 534 WP_000775316.1 DUF402 domain-containing protein -
  RDV54_RS09000 (RDV54_09000) recX 1866692..1867468 (-) 777 WP_049499824.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14883.85 Da        Isoelectric Point: 5.9409

>NTDB_id=874535 RDV54_RS08975 WP_000282464.1 1862621..1863016(+) (ssbB/cilA) [Streptococcus mitis strain LMG 14557]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGKLAESLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=874535 RDV54_RS08975 WP_000282464.1 1862621..1863016(+) (ssbB/cilA) [Streptococcus mitis strain LMG 14557]
ATGTATAATAAAGTTATCATGATTGGGCGTTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAGCGCGAAGCTGACTTTGTCAATATGGTTCTAT
GGGGCAAACTAGCAGAAAGCTTGGCCAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGTTTTGAGAAAAATGGTCAGATGAACTATGTGACTGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGACAAGATTTGGCGGATTTGGTTTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae D39

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae R6

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366