Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RCI28_RS10785 Genome accession   NZ_CP133362
Coordinates   2037562..2037897 (+) Length   111 a.a.
NCBI ID   WP_000982013.1    Uniprot ID   A0A9X6LR10
Organism   Bacillus thuringiensis serovar tenebrionis strain BI 256-82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2032562..2042897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCI28_RS10760 (RCI28_10740) - 2032757..2033584 (-) 828 WP_000499713.1 hypothetical protein -
  RCI28_RS10765 (RCI28_10745) - 2033694..2034341 (+) 648 WP_000165966.1 HD domain-containing protein -
  RCI28_RS10770 (RCI28_10750) - 2034338..2036233 (+) 1896 WP_000783164.1 ABC-F family ATP-binding cassette domain-containing protein -
  RCI28_RS10775 (RCI28_10755) - 2036309..2037040 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  RCI28_RS10780 (RCI28_10760) - 2037146..2037400 (+) 255 WP_016077798.1 DUF4318 domain-containing protein -
  RCI28_RS10785 (RCI28_10765) ssbA 2037562..2037897 (+) 336 WP_000982013.1 single-stranded DNA-binding protein Machinery gene
  RCI28_RS10790 (RCI28_10770) - 2037947..2038537 (-) 591 WP_016077797.1 TetR/AcrR family transcriptional regulator -
  RCI28_RS10795 (RCI28_10775) - 2038680..2039813 (-) 1134 WP_016077796.1 FAD-dependent oxidoreductase -
  RCI28_RS10800 (RCI28_10780) - 2040089..2041216 (+) 1128 WP_000692582.1 conserved virulence factor C family protein -
  RCI28_RS10805 (RCI28_10785) - 2041220..2041603 (+) 384 WP_000634874.1 thiol-disulfide oxidoreductase DCC family protein -
  RCI28_RS10810 (RCI28_10790) - 2041687..2042121 (+) 435 WP_000063708.1 BrxA/BrxB family bacilliredoxin -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12785.64 Da        Isoelectric Point: 9.4344

>NTDB_id=873603 RCI28_RS10785 WP_000982013.1 2037562..2037897(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
MMNRVVLIGRLTKEPELYYTKQGVAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=873603 RCI28_RS10785 WP_000982013.1 2037562..2037897(+) (ssbA) [Bacillus thuringiensis serovar tenebrionis strain BI 256-82]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGGTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396