Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RCG23_RS13115 Genome accession   NZ_CP133267
Coordinates   2523060..2523422 (+) Length   120 a.a.
NCBI ID   WP_308176043.1    Uniprot ID   A0AA51Q9A8
Organism   Neobacillus sp. PS3-34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2518060..2528422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG23_RS13085 (RCG23_13085) - 2518546..2519367 (+) 822 WP_308176038.1 flagellar hook-basal body protein -
  RCG23_RS13090 (RCG23_13090) - 2519395..2520225 (+) 831 WP_308176039.1 flagellar hook-basal body protein -
  RCG23_RS13095 (RCG23_13095) - 2520240..2520512 (+) 273 WP_308176040.1 DNA-directed RNA polymerase subunit beta -
  RCG23_RS13100 (RCG23_13100) fabZ 2520599..2521032 (+) 434 Protein_2538 3-hydroxyacyl-ACP dehydratase FabZ -
  RCG23_RS13105 (RCG23_13105) - 2521436..2521789 (+) 354 WP_308176041.1 hypothetical protein -
  RCG23_RS13110 (RCG23_13110) - 2522389..2522808 (-) 420 WP_308176042.1 YwpF family protein -
  RCG23_RS13115 (RCG23_13115) ssbB 2523060..2523422 (+) 363 WP_308176043.1 single-stranded DNA-binding protein Machinery gene
  RCG23_RS13120 (RCG23_13120) - 2523415..2523636 (+) 222 WP_308176044.1 hypothetical protein -
  RCG23_RS13125 (RCG23_13125) - 2524117..2527096 (-) 2980 Protein_2543 DEAD/DEAH box helicase -
  RCG23_RS13130 (RCG23_13130) - 2527089..2527400 (-) 312 WP_308176045.1 hypothetical protein -
  RCG23_RS13135 (RCG23_13135) - 2527340..2527531 (-) 192 WP_308176046.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13546.40 Da        Isoelectric Point: 8.4897

>NTDB_id=873063 RCG23_RS13115 WP_308176043.1 2523060..2523422(+) (ssbB) [Neobacillus sp. PS3-34]
MINQVTLVGRLTKDPELRMTTEGTPVTHVTLAVNRQYRNHNGEVEADFVQCTLWKKNAENTVQYCRKGSVVGITGRIQTR
NYENNEGKKVYVTDVVAETVRFLSSKPHEGPIVKEEMPVG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=873063 RCG23_RS13115 WP_308176043.1 2523060..2523422(+) (ssbB) [Neobacillus sp. PS3-34]
ATGATCAATCAAGTGACGCTCGTTGGAAGATTAACTAAAGACCCCGAGCTGAGAATGACAACGGAAGGGACTCCGGTCAC
GCATGTCACCCTGGCAGTTAACCGCCAATACCGGAACCATAATGGCGAAGTGGAAGCCGATTTTGTTCAGTGTACTCTTT
GGAAAAAGAACGCTGAAAATACGGTCCAGTACTGCCGGAAAGGATCCGTTGTCGGAATAACGGGGAGAATCCAAACCCGT
AATTACGAAAACAATGAGGGCAAAAAAGTCTACGTCACAGACGTTGTGGCGGAAACTGTTCGTTTTTTGAGTTCAAAGCC
GCATGAAGGGCCGATTGTAAAGGAGGAAATGCCTGTTGGATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.972

90.833

0.608
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

88.333

0.475
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

90

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

90

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

90

0.392
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

90

0.383
  ssbB/cilA Streptococcus pneumoniae D39

42.593

90

0.383
  ssbB/cilA Streptococcus pneumoniae R6

42.593

90

0.383
  ssbB/cilA Streptococcus mitis SK321

42.593

90

0.383
  ssbB Lactococcus lactis subsp. cremoris KW2

42.453

88.333

0.375
  ssbA Streptococcus mutans UA159

40.741

90

0.367