Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RCF72_RS08105 | Genome accession | NZ_CP133242 |
| Coordinates | 1670686..1671105 (-) | Length | 139 a.a. |
| NCBI ID | WP_037572052.1 | Uniprot ID | A0AAX0ZFD5 |
| Organism | Staphylococcus chromogenes strain BTM | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1665686..1676105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCF72_RS08055 (RCF72_08015) | - | 1665873..1666085 (-) | 213 | WP_037572027.1 | hypothetical protein | - |
| RCF72_RS08060 (RCF72_08020) | - | 1666085..1666321 (-) | 237 | WP_037572029.1 | hypothetical protein | - |
| RCF72_RS08065 (RCF72_08025) | - | 1666321..1666539 (-) | 219 | Protein_1554 | DUF3310 domain-containing protein | - |
| RCF72_RS08070 (RCF72_08030) | - | 1666541..1666732 (-) | 192 | WP_037572034.1 | hypothetical protein | - |
| RCF72_RS08075 (RCF72_08035) | - | 1666733..1667149 (-) | 417 | WP_419791984.1 | hypothetical protein | - |
| RCF72_RS08080 (RCF72_08040) | - | 1667151..1667579 (-) | 429 | WP_037572039.1 | RusA family crossover junction endodeoxyribonuclease | - |
| RCF72_RS08085 (RCF72_08050) | - | 1667743..1668528 (-) | 786 | WP_105963542.1 | ATP-binding protein | - |
| RCF72_RS08090 (RCF72_08055) | - | 1668529..1669257 (-) | 729 | WP_037572043.1 | conserved phage C-terminal domain-containing protein | - |
| RCF72_RS08095 (RCF72_08060) | - | 1669320..1669952 (+) | 633 | WP_037572046.1 | hypothetical protein | - |
| RCF72_RS08100 (RCF72_08065) | - | 1670006..1670674 (-) | 669 | WP_037572049.1 | putative HNHc nuclease | - |
| RCF72_RS08105 (RCF72_08070) | ssbA | 1670686..1671105 (-) | 420 | WP_037572052.1 | single-stranded DNA-binding protein | Machinery gene |
| RCF72_RS08110 (RCF72_08075) | - | 1671105..1671728 (-) | 624 | WP_037572055.1 | ERF family protein | - |
| RCF72_RS08115 (RCF72_08080) | - | 1671725..1671943 (-) | 219 | WP_037572058.1 | DUF2483 family protein | - |
| RCF72_RS08120 (RCF72_08085) | - | 1671940..1672209 (-) | 270 | WP_419791985.1 | hypothetical protein | - |
| RCF72_RS08125 (RCF72_08090) | - | 1672461..1672673 (-) | 213 | WP_037572065.1 | hypothetical protein | - |
| RCF72_RS08130 (RCF72_08095) | - | 1672941..1673201 (-) | 261 | WP_105965179.1 | hypothetical protein | - |
| RCF72_RS08135 (RCF72_08100) | - | 1673285..1673665 (+) | 381 | WP_105963625.1 | DUF2513 domain-containing protein | - |
| RCF72_RS08140 (RCF72_08105) | - | 1673652..1673849 (-) | 198 | WP_037572072.1 | hypothetical protein | - |
| RCF72_RS08145 (RCF72_08110) | - | 1673862..1674635 (-) | 774 | WP_107360653.1 | phage antirepressor KilAC domain-containing protein | - |
| RCF72_RS08150 (RCF72_08115) | - | 1674648..1674890 (-) | 243 | WP_233664344.1 | helix-turn-helix domain-containing protein | - |
| RCF72_RS08155 (RCF72_08120) | - | 1675065..1675397 (+) | 333 | WP_419791986.1 | helix-turn-helix domain-containing protein | - |
| RCF72_RS08160 (RCF72_08125) | - | 1675412..1675921 (+) | 510 | WP_107360855.1 | ImmA/IrrE family metallo-endopeptidase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15649.35 Da Isoelectric Point: 4.9327
>NTDB_id=872726 RCF72_RS08105 WP_037572052.1 1670686..1671105(-) (ssbA) [Staphylococcus chromogenes strain BTM]
MLNRVVLVGRLTKDPEFRTTPSGVEVTTFTLAVNRNFKSKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDNVQFLEPKNNGQSNSQPKQQQGQVQDNPFDNASIDDDDLPF
MLNRVVLVGRLTKDPEFRTTPSGVEVTTFTLAVNRNFKSKDGEQQADFINCVVFRKQAENVKNFLSKGSLAGVDGRMQSR
SYENKEGQRVYVTEVVCDNVQFLEPKNNGQSNSQPKQQQGQVQDNPFDNASIDDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=872726 RCF72_RS08105 WP_037572052.1 1670686..1671105(-) (ssbA) [Staphylococcus chromogenes strain BTM]
ATGCTTAACAGAGTTGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGGCGTAGAAGTAAC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAGTAAAGATGGAGAACAACAAGCTGACTTTATTAATTGCGTTGTAT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTCTAAGTAAAGGTAGCTTAGCAGGTGTTGATGGACGTATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTTTATGTAACTGAAGTTGTTTGCGACAACGTACAATTTTTAGAACCTAAAAA
TAATGGTCAATCGAACAGTCAACCTAAACAACAACAAGGGCAAGTGCAAGATAATCCTTTTGATAACGCTAGTATCGATG
ACGACGATTTACCTTTCTAG
ATGCTTAACAGAGTTGTATTAGTAGGACGATTAACAAAAGACCCTGAATTCAGAACGACGCCATCAGGCGTAGAAGTAAC
AACATTCACACTTGCGGTAAATCGCAATTTCAAAAGTAAAGATGGAGAACAACAAGCTGACTTTATTAATTGCGTTGTAT
TCCGCAAGCAAGCTGAAAACGTCAAAAACTTTCTAAGTAAAGGTAGCTTAGCAGGTGTTGATGGACGTATGCAATCACGC
AGTTACGAAAATAAAGAAGGTCAACGTGTTTATGTAACTGAAGTTGTTTGCGACAACGTACAATTTTTAGAACCTAAAAA
TAATGGTCAATCGAACAGTCAACCTAAACAACAACAAGGGCAAGTGCAAGATAATCCTTTTGATAACGCTAGTATCGATG
ACGACGATTTACCTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.651 |
100 |
0.676 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.612 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
76.259 |
0.446 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.781 |
100 |
0.439 |
| ssbA | Streptococcus mutans UA159 |
41.727 |
100 |
0.417 |
| ssb | Vibrio cholerae strain A1552 |
31.395 |
100 |
0.388 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.129 |
100 |
0.381 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.41 |
100 |
0.374 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.41 |
100 |
0.374 |