Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   K6K02_RS19335 Genome accession   NZ_AP024626
Coordinates   3707183..3707524 (-) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3702183..3712524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K02_RS19320 (BsBEST3125_37170) hepAB 3702426..3705194 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  K6K02_RS19325 (BsBEST3125_37180) ywpJ 3705320..3706177 (-) 858 WP_014481140.1 phosphatase YwpJ -
  K6K02_RS19330 (BsBEST3125_37190) glcR 3706183..3706959 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  K6K02_RS19335 (BsBEST3125_37200) ssbB 3707183..3707524 (-) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  K6K02_RS19340 ywpG 3707601..3707983 (-) 383 Protein_3770 DynA interaction protein YwpG -
  K6K02_RS19345 (BsBEST3125_37230) ywpF 3708158..3708568 (+) 411 WP_014481144.1 YwpF-like family protein -
  K6K02_RS19350 (BsBEST3125_37240) - 3708708..3709100 (-) 393 Protein_3772 class A sortase -
  K6K02_RS22115 - 3709174..3709326 (-) 153 Protein_3773 prealbumin-like fold domain-containing protein -
  K6K02_RS19360 (BsBEST3125_37260) ywpD 3709360..3710196 (+) 837 WP_014481147.1 sensor histidine kinase -
  K6K02_RS19365 (BsBEST3125_37270) mscL 3710244..3710639 (-) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  K6K02_RS19370 (BsBEST3125_37280) fabZ 3710712..3711137 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K6K02_RS19375 (BsBEST3125_37290) rapD 3711329..3712393 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=87237 K6K02_RS19335 WP_014481141.1 3707183..3707524(-) (ssbB) [Bacillus subtilis strain BEST3125]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=87237 K6K02_RS19335 WP_014481141.1 3707183..3707524(-) (ssbB) [Bacillus subtilis strain BEST3125]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment