Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RBH91_RS20185 Genome accession   NZ_CP133085
Coordinates   4030504..4030845 (-) Length   113 a.a.
NCBI ID   WP_076759159.1    Uniprot ID   A0A1R1QWF0
Organism   Bacillus swezeyi strain EA208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4025504..4035845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH91_RS20155 srlD 4026119..4026904 (-) 786 WP_307892706.1 sorbitol-6-phosphate dehydrogenase -
  RBH91_RS20160 - 4026919..4027287 (-) 369 WP_307892707.1 PTS glucitol/sorbitol transporter subunit IIA -
  RBH91_RS20165 - 4027311..4028318 (-) 1008 WP_307892708.1 PTS glucitol/sorbitol transporter subunit IIB -
  RBH91_RS20170 - 4028336..4028884 (-) 549 WP_076759150.1 PTS glucitol/sorbitol transporter subunit IIC -
  RBH91_RS20175 - 4028881..4029324 (-) 444 WP_307892709.1 transcriptional regulator GutM -
  RBH91_RS20180 - 4029321..4030283 (-) 963 WP_307892710.1 sugar-binding transcriptional regulator -
  RBH91_RS20185 ssbB 4030504..4030845 (-) 342 WP_076759159.1 single-stranded DNA-binding protein Machinery gene
  RBH91_RS20190 - 4030948..4031319 (-) 372 WP_076759162.1 hypothetical protein -
  RBH91_RS20195 - 4031491..4031904 (+) 414 WP_307892711.1 YwpF-like family protein -
  RBH91_RS20200 mscL 4031948..4032331 (-) 384 WP_307892712.1 large conductance mechanosensitive channel protein MscL -
  RBH91_RS20205 fabZ 4032400..4032834 (-) 435 WP_307892713.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RBH91_RS20210 - 4033167..4033994 (-) 828 WP_307892714.1 flagellar hook-basal body protein -
  RBH91_RS20215 - 4034043..4034882 (-) 840 WP_307892715.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12648.40 Da        Isoelectric Point: 9.8500

>NTDB_id=871770 RBH91_RS20185 WP_076759159.1 4030504..4030845(-) (ssbB) [Bacillus swezeyi strain EA208]
MFNQIMLVGRLTKDPELRHTSNGVPVANIILAVSRHFKNAGGEIETDFVNCTLWRKTAENTAEYCRKGSIIGLNGRIQTR
NDVDSEGKRVFKTEVVARSVRFLGEKPRESADA

Nucleotide


Download         Length: 342 bp        

>NTDB_id=871770 RBH91_RS20185 WP_076759159.1 4030504..4030845(-) (ssbB) [Bacillus swezeyi strain EA208]
ATGTTTAATCAGATCATGCTGGTCGGGCGTTTAACAAAAGACCCGGAGCTTCGCCATACATCTAACGGTGTCCCGGTTGC
GAATATTATCTTGGCTGTCAGCAGGCATTTCAAAAATGCCGGCGGCGAAATTGAAACGGACTTTGTCAATTGTACACTGT
GGCGCAAAACGGCTGAGAATACAGCCGAATATTGCAGAAAAGGATCAATCATCGGTCTGAATGGAAGAATTCAGACCCGA
AATGATGTTGATTCAGAAGGGAAGCGCGTCTTTAAAACAGAAGTTGTTGCCCGCTCAGTACGGTTTTTGGGTGAAAAGCC
CCGTGAATCCGCTGACGCTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1QWF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.568

98.23

0.664
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

50.485

91.15

0.46
  ssbB Lactococcus lactis subsp. cremoris KW2

41.228

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.748

91.15

0.381
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.748

91.15

0.381
  ssbB/cilA Streptococcus mitis NCTC 12261

41.748

91.15

0.381
  ssbA Streptococcus mutans UA159

41.748

91.15

0.381
  ssbB/cilA Streptococcus pneumoniae D39

40.777

91.15

0.372
  ssbB/cilA Streptococcus pneumoniae R6

40.777

91.15

0.372
  ssbB/cilA Streptococcus mitis SK321

40.777

91.15

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

40.777

91.15

0.372