Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RA957_RS16620 Genome accession   NZ_CP133077
Coordinates   3292540..3292899 (-) Length   119 a.a.
NCBI ID   WP_011232661.1    Uniprot ID   U2WRT9
Organism   Geobacillus kaustophilus strain T-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3287540..3297899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA957_RS16600 (RA957_16595) wecB 3288388..3289533 (-) 1146 WP_025039149.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  RA957_RS16605 (RA957_16600) - 3289759..3291111 (-) 1353 WP_025039148.1 peptidoglycan-binding protein -
  RA957_RS16610 (RA957_16605) - 3291294..3291803 (-) 510 WP_011232659.1 hypothetical protein -
  RA957_RS16615 (RA957_16610) - 3292012..3292419 (+) 408 WP_014196835.1 helix-turn-helix domain-containing protein -
  RA957_RS16620 (RA957_16615) ssbB 3292540..3292899 (-) 360 WP_011232661.1 single-stranded DNA-binding protein Machinery gene
  RA957_RS16625 (RA957_16620) - 3293169..3293609 (+) 441 WP_021322699.1 YwpF-like family protein -
  RA957_RS16630 (RA957_16625) - 3293666..3294295 (-) 630 WP_014196837.1 class D sortase -
  RA957_RS16635 (RA957_16630) - 3294302..3295201 (-) 900 WP_021322698.1 processed acidic surface protein -
  RA957_RS16640 (RA957_16635) - 3295582..3296958 (-) 1377 WP_042379307.1 aspartate kinase -
  RA957_RS16645 (RA957_16640) - 3297236..3297670 (-) 435 WP_042379309.1 DUF1284 domain-containing protein -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13427.38 Da        Isoelectric Point: 9.8293

>NTDB_id=871634 RA957_RS16620 WP_011232661.1 3292540..3292899(-) (ssbB) [Geobacillus kaustophilus strain T-1]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV

Nucleotide


Download         Length: 360 bp        

>NTDB_id=871634 RA957_RS16620 WP_011232661.1 3292540..3292899(-) (ssbB) [Geobacillus kaustophilus strain T-1]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2WRT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.961

86.555

0.588
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.385

87.395

0.571
  ssb Latilactobacillus sakei subsp. sakei 23K

60

88.235

0.529
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.571

88.235

0.429
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.667

88.235

0.412
  ssbB/cilA Streptococcus mitis NCTC 12261

46.667

88.235

0.412
  ssbB/cilA Streptococcus pneumoniae Rx1

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae D39

45.714

88.235

0.403
  ssbB/cilA Streptococcus pneumoniae R6

45.714

88.235

0.403
  ssbB/cilA Streptococcus mitis SK321

45.714

88.235

0.403
  ssbA Streptococcus mutans UA159

45.714

88.235

0.403
  ssbB Lactococcus lactis subsp. cremoris KW2

42.308

87.395

0.37