Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   RA292_RS18020 Genome accession   NZ_CP132912
Coordinates   3509466..3509807 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. natto strain BN-P15-11-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3504466..3514807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA292_RS18005 hepAB 3504707..3507475 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  RA292_RS18010 ywpJ 3507603..3508460 (-) 858 WP_003227801.1 phosphatase YwpJ -
  RA292_RS18015 glcR 3508466..3509242 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  RA292_RS18020 ssbB 3509466..3509807 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  RA292_RS18025 ywpG 3509884..3510267 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  RA292_RS18030 ywpF 3510442..3510852 (+) 411 WP_003227794.1 YwpF-like family protein -
  RA292_RS18035 - 3510992..3511384 (-) 393 Protein_3518 class A sortase -
  RA292_RS20565 - 3511458..3511610 (-) 153 Protein_3519 prealbumin-like fold domain-containing protein -
  RA292_RS18045 ywpD 3511644..3512480 (+) 837 WP_003227787.1 sensor histidine kinase -
  RA292_RS18050 mscL 3512527..3512919 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  RA292_RS18055 fabZ 3512992..3513417 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  RA292_RS18060 rapD 3513609..3514673 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=870678 RA292_RS18020 WP_003227798.1 3509466..3509807(-) (ssbB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=870678 RA292_RS18020 WP_003227798.1 3509466..3509807(-) (ssbB) [Bacillus subtilis subsp. natto strain BN-P15-11-1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389