Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   K6J91_RS19360 Genome accession   NZ_AP024624
Coordinates   3705982..3706323 (-) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis strain BEST3106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3700982..3711323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J91_RS19345 (BsBEST3106_37200) hepAB 3701225..3703993 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  K6J91_RS19350 (BsBEST3106_37210) ywpJ 3704119..3704976 (-) 858 WP_014481140.1 phosphatase YwpJ -
  K6J91_RS19355 (BsBEST3106_37220) glcR 3704982..3705758 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  K6J91_RS19360 (BsBEST3106_37230) ssbB 3705982..3706323 (-) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  K6J91_RS19365 ywpG 3706400..3706782 (-) 383 Protein_3774 DynA interaction protein YwpG -
  K6J91_RS19370 (BsBEST3106_37260) ywpF 3706957..3707367 (+) 411 WP_014481144.1 YwpF-like family protein -
  K6J91_RS19375 (BsBEST3106_37270) - 3707507..3707899 (-) 393 Protein_3776 class A sortase -
  K6J91_RS22205 - 3707973..3708125 (-) 153 Protein_3777 prealbumin-like fold domain-containing protein -
  K6J91_RS19385 (BsBEST3106_37290) ywpD 3708159..3708995 (+) 837 WP_014481147.1 sensor histidine kinase -
  K6J91_RS19390 (BsBEST3106_37300) mscL 3709043..3709438 (-) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  K6J91_RS19395 (BsBEST3106_37310) fabZ 3709511..3709936 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K6J91_RS19400 (BsBEST3106_37320) rapD 3710128..3711192 (+) 1065 WP_221252619.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=87067 K6J91_RS19360 WP_014481141.1 3705982..3706323(-) (ssbB) [Bacillus subtilis strain BEST3106]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=87067 K6J91_RS19360 WP_014481141.1 3705982..3706323(-) (ssbB) [Bacillus subtilis strain BEST3106]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment