Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   Q7621_RS09000 Genome accession   NZ_CP131712
Coordinates   1828927..1829637 (+) Length   236 a.a.
NCBI ID   WP_000760670.1    Uniprot ID   A0A7X2XHN6
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1823927..1834637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS08985 (Q7621_08980) - 1824468..1824716 (-) 249 WP_000364990.1 YneF family protein -
  Q7621_RS08990 (Q7621_08985) treC 1824972..1826597 (-) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  Q7621_RS08995 (Q7621_08990) treP 1826775..1828742 (-) 1968 WP_000514317.1 PTS system trehalose-specific EIIBC component -
  Q7621_RS09000 (Q7621_08995) treR 1828927..1829637 (+) 711 WP_000760670.1 trehalose operon repressor Regulator
  Q7621_RS09005 (Q7621_09000) - 1829670..1830473 (-) 804 WP_000202629.1 ATP-binding cassette domain-containing protein -
  Q7621_RS09010 (Q7621_09005) - 1830486..1831379 (-) 894 WP_001012089.1 ABC transporter permease -
  Q7621_RS09015 (Q7621_09010) - 1831391..1832328 (-) 938 Protein_1785 ABC transporter substrate-binding protein -
  Q7621_RS09020 (Q7621_09015) amiF 1832819..1833745 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27679.84 Da        Isoelectric Point: 8.2477

>NTDB_id=864280 Q7621_RS09000 WP_000760670.1 1828927..1829637(+) (treR) [Streptococcus pneumoniae strain 2008C09-280]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIREQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=864280 Q7621_RS09000 WP_000760670.1 1828927..1829637(+) (treR) [Streptococcus pneumoniae strain 2008C09-280]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGAGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X2XHN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589