Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q5H80_RS14240 Genome accession   NZ_CP130748
Coordinates   3192064..3193176 (-) Length   370 a.a.
NCBI ID   WP_304565977.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3187064..3198176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS14210 (Q5H80_14210) hemF 3187603..3188520 (-) 918 WP_304565952.1 oxygen-dependent coproporphyrinogen oxidase -
  Q5H80_RS14215 (Q5H80_14215) - 3188541..3189098 (-) 558 WP_304565954.1 L-threonylcarbamoyladenylate synthase -
  Q5H80_RS14220 (Q5H80_14220) purE 3189294..3189779 (+) 486 WP_192889631.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  Q5H80_RS14225 (Q5H80_14225) - 3189785..3190915 (+) 1131 WP_304565957.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  Q5H80_RS14230 (Q5H80_14230) - 3191002..3191571 (-) 570 WP_004735775.1 type I DNA topoisomerase -
  Q5H80_RS14235 (Q5H80_14235) - 3191584..3192060 (-) 477 WP_019820292.1 DUF494 family protein -
  Q5H80_RS14240 (Q5H80_14240) dprA 3192064..3193176 (-) 1113 WP_304565977.1 DNA-processing protein DprA Machinery gene
  Q5H80_RS14245 (Q5H80_14245) - 3193173..3194264 (-) 1092 WP_304565979.1 LysM peptidoglycan-binding domain-containing protein -
  Q5H80_RS14250 (Q5H80_14250) def 3194405..3194917 (+) 513 WP_004735769.1 peptide deformylase -
  Q5H80_RS14255 (Q5H80_14255) fmt 3194956..3195921 (+) 966 WP_304565995.1 methionyl-tRNA formyltransferase -
  Q5H80_RS14260 (Q5H80_14260) rsmB 3196041..3197321 (+) 1281 WP_304565997.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39943.63 Da        Isoelectric Point: 7.0590

>NTDB_id=861319 Q5H80_RS14240 WP_304565977.1 3192064..3193176(-) (dprA) [Vibrio sp. SNU_ST1]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGNSSQQLQAMGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVGKLIEPQIAMVGSRNASIEGLQTAKAFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICDNGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQNAQDVLIEIKSLLDWSIDQQPSLFEPTPNEGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=861319 Q5H80_RS14240 WP_304565977.1 3192064..3193176(-) (dprA) [Vibrio sp. SNU_ST1]
GTGAATGAGCAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAACGCCTTTCTCGCCTGCT
GAGTATCGATTCCCCTTCGAACATTGTTGGCAACTCAAGTCAGCAGCTACAAGCGATGGGTTTGTCAGCCAAGCAAATTT
CTTATCTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGCGTGGCAAGCAAGGCAGCCCAACCATCACATCATT
ACCCCTAACTGCCCACACTACCCCAAACTGCTGAACGAGACAGCCTCTGCGCCCAGTGTTCTTTTCGTTAAGGGTCATGT
TGGAAAACTGATTGAGCCTCAAATCGCTATGGTTGGTAGTCGTAATGCCAGTATCGAAGGACTACAAACCGCGAAGGCCT
TCGCCAAAGAGTTTGTCCAAAACGGCTTGATCGTCACCAGTGGTTTAGCCTTAGGCATTGATGGCTATGCTCATGATGGT
GCTTTGGATAAAGGAGGGGAGACCTTCGCAGTGTTGGGCTCTGGCTTAGATTCCATTTACCCTGCGCGGCACAGAAATCT
AGCGGATAGAATTTGTGATAATGGTGCGCTGATTTCAGAGTTTCGGCCAAGTGCTAAACCACGACCTGAACATTTCCCCC
GACGTAATCGTATTATTAGTGGCTTGTCGCTAGGAACCTTAGTGGTTGAAGCGGCTGAGAAGAGTGGCTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGCCGAGAGGTGTTTGCGCTTCCAGGCTCAATTCATAGTCCAACCAGCCGCGGAGGTAA
CAGCTTAATTAAAGCTGGAGCATGTTTAGTACAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGCCGAATGAGGGTGAAAATGAGCAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

57.754

100

0.584
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.473
  dprA Legionella pneumophila strain ERS1305867

45.732

88.649

0.405
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.395
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.395
  dprA Acinetobacter baumannii D1279779

40

95.946

0.384
  dprA Acinetobacter baumannii strain A118

41.566

89.73

0.373
  dprA Acinetobacter baylyi ADP1

40.896

90.541

0.37