Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q2310_RS10695 Genome accession   NZ_CP130491
Coordinates   2060535..2060870 (+) Length   111 a.a.
NCBI ID   WP_061113322.1    Uniprot ID   -
Organism   Bacillus cereus strain T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2055535..2065870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2310_RS10670 (Q2310_10650) - 2055730..2056557 (-) 828 WP_025709741.1 hypothetical protein -
  Q2310_RS10675 (Q2310_10655) - 2056667..2057314 (+) 648 WP_000165965.1 HD domain-containing protein -
  Q2310_RS10680 (Q2310_10660) - 2057311..2059206 (+) 1896 WP_000783169.1 ABC-F family ATP-binding cassette domain-containing protein -
  Q2310_RS10685 (Q2310_10665) - 2059282..2060013 (+) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  Q2310_RS10690 (Q2310_10670) - 2060119..2060373 (+) 255 WP_000975137.1 DUF4318 domain-containing protein -
  Q2310_RS10695 (Q2310_10675) ssbA 2060535..2060870 (+) 336 WP_061113322.1 single-stranded DNA-binding protein Machinery gene
  Q2310_RS10700 (Q2310_10680) - 2061420..2062547 (+) 1128 WP_061113323.1 conserved virulence factor C family protein -
  Q2310_RS10705 (Q2310_10685) - 2062551..2062934 (+) 384 WP_000634884.1 thiol-disulfide oxidoreductase DCC family protein -
  Q2310_RS10710 (Q2310_10690) - 2063018..2063453 (+) 436 Protein_2025 BrxA/BrxB family bacilliredoxin -
  Q2310_RS10715 (Q2310_10695) - 2063503..2064279 (+) 777 WP_061113324.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12800.65 Da        Isoelectric Point: 9.7036

>NTDB_id=858644 Q2310_RS10695 WP_061113322.1 2060535..2060870(+) (ssbA) [Bacillus cereus strain T]
MMNRVVLIGRLTKEPELYYTKQGVAYTRICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=858644 Q2310_RS10695 WP_061113322.1 2060535..2060870(+) (ssbA) [Bacillus cereus strain T]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATAC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.545

99.099

0.441
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

38.182

99.099

0.378
  ssbB/cilA Streptococcus pneumoniae D39

38.182

99.099

0.378
  ssbB/cilA Streptococcus pneumoniae R6

38.182

99.099

0.378
  ssbB/cilA Streptococcus mitis SK321

38.182

99.099

0.378