Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | Q2T90_RS09660 | Genome accession | NZ_CP130489 |
| Coordinates | 1960782..1961204 (+) | Length | 140 a.a. |
| NCBI ID | WP_302885614.1 | Uniprot ID | - |
| Organism | Staphylococcus devriesei strain GYZ2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1947370..1990603 | 1960782..1961204 | within | 0 |
Gene organization within MGE regions
Location: 1947370..1990603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q2T90_RS09540 (Q2T90_09540) | sufB | 1947370..1948767 (+) | 1398 | WP_037537233.1 | Fe-S cluster assembly protein SufB | - |
| Q2T90_RS09545 (Q2T90_09545) | - | 1948835..1949884 (-) | 1050 | WP_302885599.1 | tyrosine-type recombinase/integrase | - |
| Q2T90_RS09550 (Q2T90_09550) | - | 1949946..1950302 (-) | 357 | WP_107505743.1 | DoxX family protein | - |
| Q2T90_RS09555 (Q2T90_09555) | - | 1950876..1951058 (-) | 183 | WP_103167016.1 | hypothetical protein | - |
| Q2T90_RS09560 (Q2T90_09560) | - | 1951186..1952850 (-) | 1665 | WP_302885600.1 | DpnII family type II restriction endonuclease | - |
| Q2T90_RS09565 (Q2T90_09565) | - | 1953015..1953155 (-) | 141 | WP_199219372.1 | hypothetical protein | - |
| Q2T90_RS09570 (Q2T90_09570) | - | 1953167..1953901 (-) | 735 | WP_302885601.1 | XRE family transcriptional regulator | - |
| Q2T90_RS09575 (Q2T90_09575) | - | 1954053..1954265 (+) | 213 | WP_107606882.1 | helix-turn-helix transcriptional regulator | - |
| Q2T90_RS09580 (Q2T90_09580) | - | 1954316..1955095 (+) | 780 | WP_302885602.1 | Bro-N domain-containing protein | - |
| Q2T90_RS09585 (Q2T90_09585) | - | 1955214..1955444 (-) | 231 | WP_302885603.1 | hypothetical protein | - |
| Q2T90_RS09590 (Q2T90_09590) | - | 1955506..1956432 (+) | 927 | WP_302885604.1 | DUF3102 domain-containing protein | - |
| Q2T90_RS09595 (Q2T90_09595) | - | 1956425..1956943 (+) | 519 | WP_302885605.1 | ORF6C domain-containing protein | - |
| Q2T90_RS09600 (Q2T90_09600) | - | 1956984..1957211 (+) | 228 | WP_302885606.1 | transcriptional regulator | - |
| Q2T90_RS09605 (Q2T90_09605) | - | 1957388..1957615 (+) | 228 | WP_302885607.1 | hypothetical protein | - |
| Q2T90_RS09610 (Q2T90_09610) | - | 1957651..1957884 (+) | 234 | WP_302885608.1 | MW1434 family type I TA system toxin | - |
| Q2T90_RS09615 (Q2T90_09615) | - | 1957870..1958208 (-) | 339 | WP_058714326.1 | hypothetical protein | - |
| Q2T90_RS09620 (Q2T90_09620) | - | 1958297..1958518 (+) | 222 | WP_302885609.1 | hypothetical protein | - |
| Q2T90_RS09625 (Q2T90_09625) | - | 1958790..1958936 (+) | 147 | WP_167409755.1 | hypothetical protein | - |
| Q2T90_RS09630 (Q2T90_09630) | - | 1958933..1959163 (-) | 231 | WP_103167542.1 | hypothetical protein | - |
| Q2T90_RS09635 (Q2T90_09635) | - | 1959223..1959453 (+) | 231 | WP_107520401.1 | hypothetical protein | - |
| Q2T90_RS09640 (Q2T90_09640) | - | 1959437..1959628 (+) | 192 | WP_302885610.1 | hypothetical protein | - |
| Q2T90_RS09645 (Q2T90_09645) | - | 1959683..1959928 (+) | 246 | WP_302885611.1 | hypothetical protein | - |
| Q2T90_RS09650 (Q2T90_09650) | - | 1959894..1960118 (+) | 225 | WP_302885612.1 | DUF2483 family protein | - |
| Q2T90_RS09655 (Q2T90_09655) | - | 1960111..1960785 (+) | 675 | WP_302885613.1 | ERF family protein | - |
| Q2T90_RS09660 (Q2T90_09660) | ssbA | 1960782..1961204 (+) | 423 | WP_302885614.1 | single-stranded DNA-binding protein | Machinery gene |
| Q2T90_RS09665 (Q2T90_09665) | - | 1961216..1961890 (+) | 675 | WP_302885615.1 | putative HNHc nuclease | - |
| Q2T90_RS09670 (Q2T90_09670) | - | 1961887..1962591 (+) | 705 | WP_302885616.1 | helix-turn-helix domain-containing protein | - |
| Q2T90_RS09675 (Q2T90_09675) | - | 1962597..1962956 (+) | 360 | WP_302885617.1 | hypothetical protein | - |
| Q2T90_RS09680 (Q2T90_09680) | - | 1962949..1964184 (+) | 1236 | WP_302885618.1 | DnaB helicase C-terminal domain-containing protein | - |
| Q2T90_RS09685 (Q2T90_09685) | - | 1964181..1964387 (+) | 207 | WP_302885619.1 | hypothetical protein | - |
| Q2T90_RS09690 (Q2T90_09690) | - | 1964378..1964596 (+) | 219 | WP_107522086.1 | hypothetical protein | - |
| Q2T90_RS09695 (Q2T90_09695) | - | 1964608..1965015 (+) | 408 | WP_302885620.1 | RusA family crossover junction endodeoxyribonuclease | - |
| Q2T90_RS09700 (Q2T90_09700) | - | 1965015..1965203 (+) | 189 | WP_302885621.1 | hypothetical protein | - |
| Q2T90_RS09705 (Q2T90_09705) | - | 1965206..1965385 (+) | 180 | WP_302885622.1 | helix-turn-helix domain-containing protein | - |
| Q2T90_RS09710 (Q2T90_09710) | - | 1965369..1965620 (+) | 252 | WP_302885623.1 | hypothetical protein | - |
| Q2T90_RS09715 (Q2T90_09715) | - | 1965625..1966050 (+) | 426 | WP_302885624.1 | DUF3310 domain-containing protein | - |
| Q2T90_RS09720 (Q2T90_09720) | - | 1966234..1966752 (+) | 519 | WP_302885836.1 | dUTP diphosphatase | - |
| Q2T90_RS09725 (Q2T90_09725) | - | 1966789..1966941 (+) | 153 | WP_145356840.1 | DUF1381 domain-containing protein | - |
| Q2T90_RS09730 (Q2T90_09730) | - | 1966934..1967110 (+) | 177 | WP_233667496.1 | transcriptional activator RinB | - |
| Q2T90_RS09735 (Q2T90_09735) | - | 1967247..1967705 (+) | 459 | WP_107520203.1 | hypothetical protein | - |
| Q2T90_RS09740 (Q2T90_09740) | - | 1967804..1968103 (+) | 300 | WP_302885625.1 | HNH endonuclease | - |
| Q2T90_RS09745 (Q2T90_09745) | - | 1968242..1968592 (+) | 351 | WP_070653714.1 | hypothetical protein | - |
| Q2T90_RS09750 (Q2T90_09750) | - | 1968589..1970241 (+) | 1653 | WP_302885626.1 | terminase TerL endonuclease subunit | - |
| Q2T90_RS09755 (Q2T90_09755) | - | 1970253..1971416 (+) | 1164 | WP_302885627.1 | phage portal protein | - |
| Q2T90_RS09760 (Q2T90_09760) | - | 1971406..1972176 (+) | 771 | WP_107520189.1 | head maturation protease, ClpP-related | - |
| Q2T90_RS09765 (Q2T90_09765) | - | 1972196..1973434 (+) | 1239 | WP_103167332.1 | phage major capsid protein | - |
| Q2T90_RS09770 (Q2T90_09770) | - | 1973446..1973616 (+) | 171 | WP_198644373.1 | hypothetical protein | - |
| Q2T90_RS09775 (Q2T90_09775) | - | 1973622..1973909 (+) | 288 | WP_302885628.1 | hypothetical protein | - |
| Q2T90_RS09780 (Q2T90_09780) | - | 1973893..1974243 (+) | 351 | WP_233649172.1 | phage head-tail adapter protein | - |
| Q2T90_RS09785 (Q2T90_09785) | - | 1974270..1974635 (+) | 366 | WP_241957665.1 | hypothetical protein | - |
| Q2T90_RS09790 (Q2T90_09790) | - | 1974635..1975030 (+) | 396 | WP_103167338.1 | hypothetical protein | - |
| Q2T90_RS09795 (Q2T90_09795) | - | 1975087..1975974 (+) | 888 | WP_107643160.1 | major tail protein | - |
| Q2T90_RS09800 (Q2T90_09800) | - | 1976065..1976382 (+) | 318 | WP_302885629.1 | hypothetical protein | - |
| Q2T90_RS09805 (Q2T90_09805) | - | 1976379..1976627 (+) | 249 | WP_275113277.1 | UPF0158 family protein | - |
| Q2T90_RS09810 (Q2T90_09810) | - | 1976671..1982358 (+) | 5688 | WP_302885630.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| Q2T90_RS09815 (Q2T90_09815) | - | 1982365..1983210 (+) | 846 | WP_302885631.1 | phage tail domain-containing protein | - |
| Q2T90_RS09820 (Q2T90_09820) | - | 1983222..1984343 (+) | 1122 | WP_302885632.1 | hypothetical protein | - |
| Q2T90_RS09825 (Q2T90_09825) | - | 1984340..1985572 (+) | 1233 | WP_302885633.1 | hypothetical protein | - |
| Q2T90_RS09830 (Q2T90_09830) | - | 1985576..1987822 (+) | 2247 | WP_302885634.1 | phage tail spike protein | - |
| Q2T90_RS09835 (Q2T90_09835) | - | 1987834..1988097 (+) | 264 | WP_302885635.1 | hypothetical protein | - |
| Q2T90_RS09840 (Q2T90_09840) | - | 1988151..1988450 (+) | 300 | WP_107635641.1 | DUF2951 family protein | - |
| Q2T90_RS09845 (Q2T90_09845) | - | 1988586..1988885 (+) | 300 | WP_107520199.1 | hypothetical protein | - |
| Q2T90_RS09850 (Q2T90_09850) | - | 1988885..1990603 (+) | 1719 | WP_302885636.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15775.30 Da Isoelectric Point: 5.2154
>NTDB_id=858602 Q2T90_RS09660 WP_302885614.1 1960782..1961204(+) (ssbA) [Staphylococcus devriesei strain GYZ2]
MINRVILVGRLTKDPNFNEGNVANARFTLAVNRPFKNKNGEQEADFINVVAFRRQAENVNNYLSKGQLAGVDGRIQTHSY
EKDGQRVYVTEVVADSVQFLEPKNNNQKNNQPQQQREQAPAGNNPFGNNNADIDDDDLPF
MINRVILVGRLTKDPNFNEGNVANARFTLAVNRPFKNKNGEQEADFINVVAFRRQAENVNNYLSKGQLAGVDGRIQTHSY
EKDGQRVYVTEVVADSVQFLEPKNNNQKNNQPQQQREQAPAGNNPFGNNNADIDDDDLPF
Nucleotide
Download Length: 423 bp
>NTDB_id=858602 Q2T90_RS09660 WP_302885614.1 1960782..1961204(+) (ssbA) [Staphylococcus devriesei strain GYZ2]
ATGATAAATAGAGTAATTTTAGTAGGTAGATTAACGAAAGATCCAAATTTTAATGAAGGCAATGTAGCAAATGCAAGATT
TACATTAGCAGTAAATAGACCGTTTAAAAATAAAAATGGCGAACAAGAGGCTGATTTTATAAACGTAGTAGCTTTCAGAC
GACAAGCGGAAAACGTAAATAATTATCTATCAAAAGGACAACTTGCTGGAGTAGACGGCCGTATTCAGACACATAGCTAT
GAAAAAGACGGCCAACGTGTATATGTAACAGAAGTCGTGGCTGACAGCGTTCAATTCTTAGAACCTAAGAATAACAATCA
AAAAAATAATCAACCTCAACAACAGCGAGAACAAGCACCAGCAGGCAATAATCCGTTTGGTAATAACAACGCAGATATAG
ATGATGACGATCTACCATTCTAG
ATGATAAATAGAGTAATTTTAGTAGGTAGATTAACGAAAGATCCAAATTTTAATGAAGGCAATGTAGCAAATGCAAGATT
TACATTAGCAGTAAATAGACCGTTTAAAAATAAAAATGGCGAACAAGAGGCTGATTTTATAAACGTAGTAGCTTTCAGAC
GACAAGCGGAAAACGTAAATAATTATCTATCAAAAGGACAACTTGCTGGAGTAGACGGCCGTATTCAGACACATAGCTAT
GAAAAAGACGGCCAACGTGTATATGTAACAGAAGTCGTGGCTGACAGCGTTCAATTCTTAGAACCTAAGAATAACAATCA
AAAAAATAATCAACCTCAACAACAGCGAGAACAAGCACCAGCAGGCAATAATCCGTTTGGTAATAACAACGCAGATATAG
ATGATGACGATCTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.657 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
48.824 |
100 |
0.593 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.667 |
100 |
0.429 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
75.714 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.972 |
100 |
0.421 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.972 |
100 |
0.421 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.972 |
100 |
0.421 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.972 |
100 |
0.421 |
| ssbA | Streptococcus mutans UA159 |
40.972 |
100 |
0.421 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.278 |
100 |
0.414 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.524 |
75 |
0.371 |
| ssb | Neisseria meningitidis MC58 |
29.31 |
100 |
0.364 |