Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   Q0M94_RS03615 Genome accession   NZ_CP129906
Coordinates   677432..677635 (+) Length   67 a.a.
NCBI ID   WP_407540499.1    Uniprot ID   -
Organism   Deinococcus radiomollis strain PO-04-20-132     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 631512..681815 677432..677635 within 0


Gene organization within MGE regions


Location: 631512..681815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0M94_RS03320 (Q0M94_03320) comEC 631512..633575 (+) 2064 WP_407540441.1 ComEC/Rec2 family competence protein Machinery gene
  Q0M94_RS03325 (Q0M94_03325) - 633777..634682 (-) 906 WP_407540442.1 DUF3037 domain-containing protein -
  Q0M94_RS03330 (Q0M94_03330) - 634686..635540 (-) 855 WP_407540443.1 HipA family kinase -
  Q0M94_RS03335 (Q0M94_03335) - 635941..636201 (+) 261 WP_407540444.1 hypothetical protein -
  Q0M94_RS03340 (Q0M94_03340) - 636596..636958 (-) 363 WP_407540445.1 hypothetical protein -
  Q0M94_RS03345 (Q0M94_03345) - 636955..637401 (-) 447 WP_407540446.1 hypothetical protein -
  Q0M94_RS03350 (Q0M94_03350) - 637483..637803 (-) 321 WP_407540447.1 DUF6527 family protein -
  Q0M94_RS03355 (Q0M94_03355) - 637883..638368 (-) 486 WP_407540448.1 glycosyl hydrolase 108 family protein -
  Q0M94_RS03360 (Q0M94_03360) - 638365..638697 (-) 333 WP_407540449.1 hypothetical protein -
  Q0M94_RS03365 (Q0M94_03365) - 638687..639115 (-) 429 WP_407540450.1 hypothetical protein -
  Q0M94_RS03370 (Q0M94_03370) - 639112..639471 (-) 360 WP_407540451.1 hypothetical protein -
  Q0M94_RS03375 (Q0M94_03375) - 639479..639946 (-) 468 WP_407540452.1 hypothetical protein -
  Q0M94_RS03380 (Q0M94_03380) - 640005..643220 (-) 3216 WP_407540453.1 hypothetical protein -
  Q0M94_RS03385 (Q0M94_03385) - 643217..643588 (-) 372 WP_407540454.1 hypothetical protein -
  Q0M94_RS03390 (Q0M94_03390) - 643588..644859 (-) 1272 WP_407540455.1 hypothetical protein -
  Q0M94_RS03395 (Q0M94_03395) - 644852..645589 (-) 738 WP_407540456.1 hypothetical protein -
  Q0M94_RS03400 (Q0M94_03400) - 645586..646659 (-) 1074 WP_407540457.1 baseplate J/gp47 family protein -
  Q0M94_RS03405 (Q0M94_03405) - 646649..647026 (-) 378 WP_407540458.1 hypothetical protein -
  Q0M94_RS03410 (Q0M94_03410) - 647023..647517 (-) 495 WP_407540459.1 hypothetical protein -
  Q0M94_RS03415 (Q0M94_03415) - 647514..648164 (-) 651 WP_407540460.1 hypothetical protein -
  Q0M94_RS03420 (Q0M94_03420) - 648165..648713 (-) 549 WP_407540461.1 hypothetical protein -
  Q0M94_RS03425 (Q0M94_03425) - 648710..651466 (-) 2757 WP_407540462.1 hypothetical protein -
  Q0M94_RS03430 (Q0M94_03430) - 651538..651978 (-) 441 WP_407540463.1 hypothetical protein -
  Q0M94_RS03435 (Q0M94_03435) - 652137..652460 (-) 324 WP_407540464.1 hypothetical protein -
  Q0M94_RS03440 (Q0M94_03440) - 652497..652943 (-) 447 WP_407540465.1 hypothetical protein -
  Q0M94_RS03445 (Q0M94_03445) - 652945..654366 (-) 1422 WP_407540466.1 DUF2586 family protein -
  Q0M94_RS03450 (Q0M94_03450) - 654363..654599 (-) 237 WP_407540467.1 hypothetical protein -
  Q0M94_RS03455 (Q0M94_03455) - 654609..655070 (-) 462 WP_407540468.1 hypothetical protein -
  Q0M94_RS03460 (Q0M94_03460) - 655067..655561 (-) 495 WP_407540469.1 phage virion morphogenesis protein -
  Q0M94_RS03465 (Q0M94_03465) - 655569..655970 (-) 402 WP_407540470.1 phage protein Gp36 family protein -
  Q0M94_RS03470 (Q0M94_03470) - 655970..656326 (-) 357 WP_407540471.1 hypothetical protein -
  Q0M94_RS03475 (Q0M94_03475) - 656326..657249 (-) 924 WP_407540472.1 Mu-like prophage major head subunit gpT family protein -
  Q0M94_RS03480 (Q0M94_03480) - 657324..657746 (-) 423 WP_407540473.1 hypothetical protein -
  Q0M94_RS03485 (Q0M94_03485) - 657750..658919 (-) 1170 WP_407540474.1 phage protease -
  Q0M94_RS03490 (Q0M94_03490) - 658916..659593 (-) 678 WP_407540475.1 phage minor head protein -
  Q0M94_RS03495 (Q0M94_03495) - 659593..661161 (-) 1569 WP_407540476.1 DUF935 family protein -
  Q0M94_RS03500 (Q0M94_03500) - 661161..662501 (-) 1341 WP_407540477.1 terminase -
  Q0M94_RS03505 (Q0M94_03505) - 662498..663211 (-) 714 WP_407540478.1 terminase small subunit -
  Q0M94_RS03510 (Q0M94_03510) - 663238..663606 (+) 369 WP_407540479.1 hypothetical protein -
  Q0M94_RS03515 (Q0M94_03515) - 663695..664201 (-) 507 WP_407540480.1 hypothetical protein -
  Q0M94_RS03520 (Q0M94_03520) - 664231..664512 (-) 282 WP_407540481.1 hypothetical protein -
  Q0M94_RS03525 (Q0M94_03525) - 664509..664967 (-) 459 WP_407540482.1 hypothetical protein -
  Q0M94_RS03530 (Q0M94_03530) - 664964..665365 (-) 402 WP_407540483.1 hypothetical protein -
  Q0M94_RS03535 (Q0M94_03535) - 665362..665697 (-) 336 WP_407540484.1 hypothetical protein -
  Q0M94_RS03540 (Q0M94_03540) - 665694..666317 (-) 624 WP_407540485.1 hypothetical protein -
  Q0M94_RS03545 (Q0M94_03545) - 666589..669009 (-) 2421 WP_407540486.1 phage/plasmid primase, P4 family -
  Q0M94_RS03550 (Q0M94_03550) - 669124..669492 (+) 369 WP_407540487.1 hypothetical protein -
  Q0M94_RS03555 (Q0M94_03555) - 669517..670077 (-) 561 WP_407540488.1 hypothetical protein -
  Q0M94_RS03560 (Q0M94_03560) - 670074..672191 (-) 2118 WP_407540489.1 AAA family ATPase -
  Q0M94_RS03565 (Q0M94_03565) - 672269..672979 (-) 711 WP_407540490.1 hypothetical protein -
  Q0M94_RS03570 (Q0M94_03570) - 673091..673402 (-) 312 WP_407540491.1 hypothetical protein -
  Q0M94_RS03575 (Q0M94_03575) - 673406..673639 (-) 234 WP_407540492.1 hypothetical protein -
  Q0M94_RS03580 (Q0M94_03580) - 673639..674016 (-) 378 WP_407540493.1 hypothetical protein -
  Q0M94_RS03585 (Q0M94_03585) - 674013..674213 (-) 201 WP_407540494.1 hypothetical protein -
  Q0M94_RS03590 (Q0M94_03590) - 674276..674428 (-) 153 WP_407540495.1 hypothetical protein -
  Q0M94_RS03595 (Q0M94_03595) - 674425..674673 (-) 249 WP_407540496.1 helix-turn-helix transcriptional regulator -
  Q0M94_RS03600 (Q0M94_03600) - 674800..675513 (+) 714 WP_407541458.1 helix-turn-helix domain-containing protein -
  Q0M94_RS03605 (Q0M94_03605) - 675620..676003 (+) 384 WP_407540497.1 helix-turn-helix transcriptional regulator -
  Q0M94_RS03610 (Q0M94_03610) - 676003..677415 (+) 1413 WP_407540498.1 recombinase family protein -
  Q0M94_RS03615 (Q0M94_03615) comEC 677432..677635 (+) 204 WP_407540499.1 ComEC/Rec2 family competence protein Machinery gene
  Q0M94_RS03620 (Q0M94_03620) - 677645..678130 (+) 486 WP_407540500.1 hypothetical protein -
  Q0M94_RS03625 (Q0M94_03625) nrdR 678536..678982 (-) 447 WP_407540501.1 transcriptional regulator NrdR -
  Q0M94_RS03630 (Q0M94_03630) - 678989..679762 (-) 774 WP_407540502.1 SDR family NAD(P)-dependent oxidoreductase -
  Q0M94_RS03635 (Q0M94_03635) - 680006..680902 (+) 897 WP_407540503.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  Q0M94_RS03640 (Q0M94_03640) phnC 681069..681815 (+) 747 WP_407540504.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7482.48 Da        Isoelectric Point: 11.3658

>NTDB_id=856345 Q0M94_RS03615 WP_407540499.1 677432..677635(+) (comEC) [Deinococcus radiomollis strain PO-04-20-132]
MLKTAHHGSRFSSGEAFLAETQPQNAVISVGRNTYGHPNDDLLARLAARNVKVWRTDRVGTIRWPIP

Nucleotide


Download         Length: 204 bp        

>NTDB_id=856345 Q0M94_RS03615 WP_407540499.1 677432..677635(+) (comEC) [Deinococcus radiomollis strain PO-04-20-132]
TTGCTGAAGACCGCACACCACGGCAGCCGGTTTTCCAGCGGCGAGGCGTTTCTGGCCGAGACGCAGCCACAGAACGCGGT
CATCAGCGTGGGGCGCAACACCTACGGGCACCCGAACGACGACCTGCTGGCGCGGCTGGCGGCCCGGAACGTGAAGGTCT
GGCGGACCGACCGAGTGGGCACCATCAGGTGGCCGATTCCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.687

100

0.627
  comEC Lactococcus lactis subsp. cremoris KW2

50

95.522

0.478
  comA Ralstonia pseudosolanacearum GMI1000

46.032

94.03

0.433
  comEC Bacillus subtilis subsp. subtilis str. 168

44.615

97.015

0.433
  comEC/celB Streptococcus mitis SK321

44.615

97.015

0.433
  comEC/celB Streptococcus pneumoniae Rx1

43.077

97.015

0.418
  comEC/celB Streptococcus mitis NCTC 12261

43.077

97.015

0.418
  comEC/celB Streptococcus pneumoniae TIGR4

43.077

97.015

0.418
  comEC/celB Streptococcus pneumoniae D39

43.077

97.015

0.418
  comEC/celB Streptococcus pneumoniae R6

43.077

97.015

0.418
  comA/comEC Acinetobacter baumannii D1279779

40

97.015

0.388
  comA/comEC Acinetobacter baumannii strain A118

40

97.015

0.388
  comA/comEC Thermus thermophilus HB27

41.935

92.537

0.388
  comEC Latilactobacillus sakei subsp. sakei 23K

39.062

95.522

0.373
  comA Neisseria gonorrhoeae MS11

39.062

95.522

0.373