Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRA03_RS23020 Genome accession   NZ_CP129604
Coordinates   4379445..4379780 (+) Length   111 a.a.
NCBI ID   WP_000982009.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PUMB_17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4374445..4384780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS22995 (QRA03_23025) - 4374678..4375469 (-) 792 WP_000499680.1 hypothetical protein -
  QRA03_RS23000 (QRA03_23030) - 4375579..4376226 (+) 648 WP_000165947.1 HD domain-containing protein -
  QRA03_RS23005 (QRA03_23035) - 4376223..4378118 (+) 1896 WP_000783198.1 ABC-F family ATP-binding cassette domain-containing protein -
  QRA03_RS23010 (QRA03_23040) - 4378194..4378925 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  QRA03_RS23015 (QRA03_23050) - 4379030..4379284 (+) 255 WP_000975146.1 DUF4318 domain-containing protein -
  QRA03_RS23020 (QRA03_23055) ssbA 4379445..4379780 (+) 336 WP_000982009.1 single-stranded DNA-binding protein Machinery gene
  QRA03_RS23025 (QRA03_23060) - 4379809..4380399 (-) 591 WP_000943173.1 TetR/AcrR family transcriptional regulator -
  QRA03_RS23030 (QRA03_23065) - 4380501..4381634 (-) 1134 WP_001066845.1 FAD-dependent monooxygenase -
  QRA03_RS23035 (QRA03_23070) - 4381893..4383020 (+) 1128 WP_000692573.1 conserved virulence factor C family protein -
  QRA03_RS23040 (QRA03_23075) - 4383024..4383407 (+) 384 WP_000634896.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  QRA03_RS23045 (QRA03_23080) - 4383491..4383925 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  QRA03_RS23050 (QRA03_23085) - 4383975..4384529 (+) 555 Protein_4380 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12743.56 Da        Isoelectric Point: 9.4344

>NTDB_id=854542 QRA03_RS23020 WP_000982009.1 4379445..4379780(+) (ssbA) [Bacillus paranthracis strain PUMB_17]
MMNRVVLIGRLTKEPELYYTKQGVAYARACVAVNRGFRNSLGEQQVDFINCIVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=854542 QRA03_RS23020 WP_000982009.1 4379445..4379780(+) (ssbA) [Bacillus paranthracis strain PUMB_17]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGCATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTATCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATAACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

95.495

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

46.667

94.595

0.441
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbA Streptococcus mutans UA159

39.091

99.099

0.387