Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U70_RS08135 Genome accession   NZ_CP145868
Coordinates   1788347..1789132 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783347..1794132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS08115 (V6U70_08110) - 1783845..1784726 (-) 882 WP_410532341.1 glycosyltransferase family 2 protein -
  V6U70_RS08120 (V6U70_08115) - 1784730..1785938 (-) 1209 WP_410532342.1 glycosyltransferase -
  V6U70_RS08125 (V6U70_08120) - 1786133..1787572 (-) 1440 WP_070655414.1 6-phospho-beta-glucosidase -
  V6U70_RS08130 (V6U70_08125) - 1787729..1788280 (-) 552 WP_004183314.1 cysteine hydrolase family protein -
  V6U70_RS08135 (V6U70_08130) codY 1788347..1789132 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U70_RS08140 (V6U70_08135) - 1789400..1790614 (-) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  V6U70_RS08145 (V6U70_08140) - 1790974..1791426 (+) 453 WP_002891687.1 universal stress protein -
  V6U70_RS08150 (V6U70_08145) - 1791505..1792257 (-) 753 WP_014634961.1 hypothetical protein -
  V6U70_RS08155 (V6U70_08150) pflA 1792327..1793127 (-) 801 WP_021143691.1 pyruvate formate-lyase-activating protein -
  V6U70_RS08160 (V6U70_08155) - 1793314..1794054 (-) 741 WP_037602472.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=854095 V6U70_RS08135 WP_002884784.1 1788347..1789132(-) (codY) [Streptococcus salivarius strain KSS12]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=854095 V6U70_RS08135 WP_002884784.1 1788347..1789132(-) (codY) [Streptococcus salivarius strain KSS12]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAGCGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAATATGGCTGCTCAATTGGCAGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCCAAACAGCTTCCAGAAGAGTATACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGACGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGACTTTGTAGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAATTGTTGAAT
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAGACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGCCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502