Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QY866_RS04735 Genome accession   NZ_CP129530
Coordinates   956979..957431 (+) Length   150 a.a.
NCBI ID   WP_076632063.1    Uniprot ID   A0AAX0VBV9
Organism   Latilactobacillus sakei strain A1262     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 951979..962431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS04705 (QY866_04700) - 952912..953286 (-) 375 WP_011375004.1 hypothetical protein -
  QY866_RS04710 (QY866_04705) - 953383..953883 (+) 501 WP_076632058.1 VanZ family protein -
  QY866_RS04715 (QY866_04710) - 953974..954705 (+) 732 WP_341844041.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QY866_RS04720 (QY866_04715) comGA 954821..955711 (+) 891 WP_100970233.1 competence type IV pilus ATPase ComGA Machinery gene
  QY866_RS04725 (QY866_04720) comGB 955704..956711 (+) 1008 WP_076632061.1 type II secretion system F family protein Machinery gene
  QY866_RS04730 (QY866_04725) comGC 956708..957007 (+) 300 WP_076632062.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QY866_RS04735 (QY866_04730) comGD 956979..957431 (+) 453 WP_076632063.1 competence type IV pilus minor pilin ComGD Machinery gene
  QY866_RS04740 (QY866_04735) comGE 957418..957723 (+) 306 WP_025016385.1 hypothetical protein Machinery gene
  QY866_RS04745 (QY866_04740) comGF 957698..958510 (+) 813 WP_337457506.1 competence type IV pilus minor pilin ComGF Machinery gene
  QY866_RS04750 (QY866_04745) - 958634..959644 (+) 1011 WP_011374994.1 class I SAM-dependent methyltransferase -
  QY866_RS04755 (QY866_04750) - 959666..960862 (+) 1197 WP_011374993.1 acetate kinase -
  QY866_RS04760 (QY866_04755) - 960917..961375 (+) 459 WP_011374992.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17489.39 Da        Isoelectric Point: 10.2279

>NTDB_id=854098 QY866_RS04735 WP_076632063.1 956979..957431(+) (comGD) [Latilactobacillus sakei strain A1262]
MKAARLSKNEGFTLIEMCVVLAIVSLLSWLPIYQIKQYRAQQAEQLFLHQFETSWDAARQYVAIEPRAVRVMWDAPTHTI
TFKGAGESFRNHQLVLPETLTVSNPAEWHLINITHNKGIKPRTLKLKSTLNNREYQYKVQMMWGILHVQK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=854098 QY866_RS04735 WP_076632063.1 956979..957431(+) (comGD) [Latilactobacillus sakei strain A1262]
TTGAAGGCGGCACGGTTAAGCAAAAATGAAGGTTTTACGTTGATTGAAATGTGCGTGGTCTTAGCGATTGTGAGCTTATT
AAGCTGGTTGCCGATTTATCAGATTAAGCAATATCGTGCGCAACAGGCTGAGCAGTTGTTTCTACATCAATTTGAAACGA
GTTGGGATGCAGCTCGTCAATATGTGGCAATTGAACCGCGTGCCGTCCGTGTGATGTGGGATGCACCAACACATACGATC
ACATTTAAAGGTGCTGGTGAGTCATTTAGAAATCATCAACTCGTATTACCAGAAACTTTAACAGTGAGTAATCCAGCCGA
ATGGCATTTAATTAATATTACTCATAATAAGGGTATTAAACCGCGCACCTTAAAGTTAAAATCAACGCTTAATAATCGTG
AATATCAGTATAAAGTCCAGATGATGTGGGGGATATTACATGTTCAGAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Latilactobacillus sakei subsp. sakei 23K

98.667

100

0.987