Detailed information NTG0854100

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: QY866_RS04745
• Genome accession: NZ_CP129530
• Coordinates: 957698..958510 (+)
• Length: 270 a.a.
• NCBI ID: WP_337457506.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain A1262
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 952698..963510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY866_RS04705 (QY866_04700)	-	952912..953286 (-)	375	WP_011375004.1	hypothetical protein	-
QY866_RS04710 (QY866_04705)	-	953383..953883 (+)	501	WP_076632058.1	VanZ family protein	-
QY866_RS04715 (QY866_04710)	-	953974..954705 (+)	732	WP_341844041.1	YebC/PmpR family DNA-binding transcriptional regulator	-
QY866_RS04720 (QY866_04715)	comGA	954821..955711 (+)	891	WP_100970233.1	competence type IV pilus ATPase ComGA	Machinery gene
QY866_RS04725 (QY866_04720)	comGB	955704..956711 (+)	1008	WP_076632061.1	type II secretion system F family protein	Machinery gene
QY866_RS04730 (QY866_04725)	comGC	956708..957007 (+)	300	WP_076632062.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
QY866_RS04735 (QY866_04730)	comGD	956979..957431 (+)	453	WP_076632063.1	competence type IV pilus minor pilin ComGD	Machinery gene
QY866_RS04740 (QY866_04735)	comGE	957418..957723 (+)	306	WP_025016385.1	hypothetical protein	Machinery gene
QY866_RS04745 (QY866_04740)	comGF	957698..958510 (+)	813	WP_337457506.1	competence type IV pilus minor pilin ComGF	Machinery gene
QY866_RS04750 (QY866_04745)	-	958634..959644 (+)	1011	WP_011374994.1	class I SAM-dependent methyltransferase	-
QY866_RS04755 (QY866_04750)	-	959666..960862 (+)	1197	WP_011374993.1	acetate kinase	-
QY866_RS04760 (QY866_04755)	-	960917..961375 (+)	459	WP_011374992.1	hypothetical protein	-
QY866_RS04770 (QY866_04765)	-	961937..963082 (-)	1146	WP_341844042.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 270 a.a.
• Molecular weight: 31149.09 Da
• Isoelectric Point: 10.1526

>NTDB_id=854100 QY866_RS04745 WP_337457506.1 957698..958510(+) (comGF) [Latilactobacillus sakei strain A1262]
MRLIGRPIKHSAFTLIEMVISMAILILTSQLLVATVGVLQKAIKVTQQQQNTINWHISTIQLDQFLADAYFTHHQDQDGS
KITFRKPDTNQSGEEAETVYYLKRMKNEMVVVSQLDGYMPLLGKLKQLQLDYQRPFVQIDTTFTDQSRYQHEVFLEEQDE
QAKKRRLKPIKHSAVALLNAILILTLISVVLVGVTHSYQQQQQSYRYLLNHYQAKTLYELTLASQSKTDLKGIKATTGES
KILRKQHQIKVTLKNGYQKQFEIKNITGKK

Nucleotide

• Length: 813 bp

>NTDB_id=854100 QY866_RS04745 WP_337457506.1 957698..958510(+) (comGF) [Latilactobacillus sakei strain A1262]
TTGCGATTAATTGGACGACCGATTAAGCATTCAGCGTTCACGCTAATTGAAATGGTGATTTCAATGGCGATTCTAATCCT
GACGAGTCAGTTACTGGTGGCAACGGTGGGTGTTTTACAAAAGGCAATTAAAGTGACACAACAACAGCAAAATACAATCA
ATTGGCATATCAGTACGATTCAGTTAGATCAGTTTTTAGCCGATGCGTATTTTACACATCATCAGGATCAAGATGGCTCC
AAAATCACTTTTCGAAAACCAGACACTAATCAGTCAGGGGAGGAAGCAGAGACTGTTTACTATTTAAAAAGGATGAAAAA
TGAAATGGTTGTTGTCAGTCAATTAGATGGGTATATGCCATTATTAGGCAAACTCAAGCAACTTCAACTTGACTATCAGC
GACCGTTTGTTCAAATCGATACGACTTTTACGGATCAGAGTCGCTACCAACACGAAGTTTTCTTGGAGGAACAAGATGAA
CAGGCTAAAAAAAGACGATTAAAACCGATTAAACATTCGGCGGTTGCATTACTTAACGCGATATTAATACTGACATTAAT
CAGCGTCGTATTAGTAGGTGTGACACATAGTTATCAACAGCAACAACAGAGTTATCGGTATTTGCTGAATCATTATCAAG
CTAAAACACTTTATGAGCTGACCTTGGCTAGTCAATCCAAGACTGATTTAAAGGGGATTAAAGCCACAACAGGTGAAAGC
AAAATTCTAAGGAAACAGCATCAAATCAAGGTGACGCTTAAGAATGGCTATCAGAAACAGTTTGAAATAAAAAATATAAC
AGGTAAAAAATAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (40-149)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Latilactobacillus sakei subsp. sakei 23K	98.214	62.222	0.611