Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V6U70_RS08220 Genome accession   NZ_CP145868
Coordinates   1804402..1805145 (-) Length   247 a.a.
NCBI ID   WP_014634972.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799402..1810145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS08190 (V6U70_08185) - 1799676..1800620 (-) 945 WP_004183328.1 TIGR01212 family radical SAM protein -
  V6U70_RS08195 (V6U70_08190) sepM 1800706..1801782 (-) 1077 WP_048674793.1 SepM family pheromone-processing serine protease Regulator
  V6U70_RS08200 (V6U70_08195) coaD 1801760..1802257 (-) 498 WP_048674796.1 pantetheine-phosphate adenylyltransferase -
  V6U70_RS08205 (V6U70_08200) rsmD 1802290..1802838 (-) 549 WP_230578921.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V6U70_RS08210 (V6U70_08205) trxB 1802980..1803900 (-) 921 WP_002884706.1 thioredoxin-disulfide reductase -
  V6U70_RS08215 (V6U70_08210) - 1803966..1804190 (-) 225 WP_002884393.1 DUF4059 family protein -
  V6U70_RS08220 (V6U70_08215) amiE 1804402..1805145 (-) 744 WP_014634972.1 amino acid ABC transporter ATP-binding protein Regulator
  V6U70_RS08225 (V6U70_08220) - 1805145..1805891 (-) 747 WP_101799852.1 amino acid ABC transporter permease -
  V6U70_RS08230 (V6U70_08225) - 1806488..1807318 (-) 831 WP_048674808.1 transporter substrate-binding domain-containing protein -
  V6U70_RS08235 (V6U70_08230) - 1807534..1808424 (-) 891 WP_022495900.1 hypothetical protein -
  V6U70_RS08240 (V6U70_08235) dinB 1808525..1809634 (-) 1110 WP_022495899.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27650.75 Da        Isoelectric Point: 6.3616

>NTDB_id=854097 V6U70_RS08220 WP_014634972.1 1804402..1805145(-) (amiE) [Streptococcus salivarius strain KSS12]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=854097 V6U70_RS08220 WP_014634972.1 1804402..1805145(-) (amiE) [Streptococcus salivarius strain KSS12]
ATGATTAGTATCAAAAACTTGACCAAGGAATTTTCAGGTCAAAAGGTTCTTGATGGTATTGATATTGACATTGAAAAGGG
TGAAGTTGTAGCTCTTGTTGGTGCCTCTGGTGCAGGGAAATCAACAATTCTTCGTAGCTTAAACTATTTGGAACAACCTG
ATTCTGGTACCATTACCATTGATGATTTTAAAGTCGACTTTAAGACTATCACCAAAGAACAAATCCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATCACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCCTTGGCTCGTGCCCTTGCAATGAAGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTCGGTGAGGTTGAAAAATCAATCGCTGATGCGGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTAGCTGACAAGGTGCTTTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36