Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   V6U69_RS01920 Genome accession   NZ_CP145867
Coordinates   360212..360997 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 355212..365997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS01895 (V6U69_01895) - 355293..356024 (+) 732 WP_183137320.1 LPXTG cell wall anchor domain-containing protein -
  V6U69_RS01900 (V6U69_01900) pflA 356211..357011 (+) 801 WP_002891689.1 pyruvate formate-lyase-activating protein -
  V6U69_RS01905 (V6U69_01905) - 357081..357833 (+) 753 WP_004183318.1 hypothetical protein -
  V6U69_RS01910 (V6U69_01910) - 357912..358364 (-) 453 WP_002891687.1 universal stress protein -
  V6U69_RS01915 (V6U69_01915) - 358728..359942 (+) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  V6U69_RS01920 (V6U69_01920) codY 360212..360997 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  V6U69_RS01925 (V6U69_01925) - 361062..361613 (+) 552 WP_073688410.1 cysteine hydrolase family protein -
  V6U69_RS01930 (V6U69_01930) - 361735..362583 (+) 849 WP_139723737.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  V6U69_RS01935 (V6U69_01935) msrA 362595..363104 (+) 510 WP_139723738.1 peptide-methionine (S)-S-oxide reductase MsrA -
  V6U69_RS01940 (V6U69_01940) - 363257..364696 (+) 1440 WP_060972570.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=853935 V6U69_RS01920 WP_002884784.1 360212..360997(+) (codY) [Streptococcus salivarius strain KSS10]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=853935 V6U69_RS01920 WP_002884784.1 360212..360997(+) (codY) [Streptococcus salivarius strain KSS10]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGATAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTAAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATTGCTGACCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502