Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QYM42_RS02385 | Genome accession | NZ_CP129526 |
| Coordinates | 472626..473051 (+) | Length | 141 a.a. |
| NCBI ID | WP_301675325.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain ZZ-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 464370..505230 | 472626..473051 | within | 0 |
Gene organization within MGE regions
Location: 464370..505230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYM42_RS02315 (QYM42_02315) | - | 464370..465503 (-) | 1134 | WP_301675313.1 | site-specific integrase | - |
| QYM42_RS02320 (QYM42_02320) | - | 465627..466250 (-) | 624 | WP_301675314.1 | transcriptional regulator | - |
| QYM42_RS02325 (QYM42_02325) | - | 466308..466508 (-) | 201 | WP_301675315.1 | hypothetical protein | - |
| QYM42_RS02330 (QYM42_02330) | - | 466554..467555 (-) | 1002 | WP_301675316.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QYM42_RS02335 (QYM42_02335) | - | 467568..467924 (-) | 357 | WP_301675317.1 | helix-turn-helix domain-containing protein | - |
| QYM42_RS02340 (QYM42_02340) | - | 468221..468427 (+) | 207 | WP_301675318.1 | hypothetical protein | - |
| QYM42_RS02345 (QYM42_02345) | - | 468443..469171 (+) | 729 | WP_301675319.1 | phage antirepressor KilAC domain-containing protein | - |
| QYM42_RS02350 (QYM42_02350) | - | 469184..469516 (+) | 333 | WP_301675320.1 | DUF771 domain-containing protein | - |
| QYM42_RS02355 (QYM42_02355) | - | 469656..469847 (+) | 192 | WP_301675321.1 | hypothetical protein | - |
| QYM42_RS02360 (QYM42_02360) | - | 469877..470158 (-) | 282 | WP_109991395.1 | DUF3892 domain-containing protein | - |
| QYM42_RS02365 (QYM42_02365) | - | 470279..470476 (+) | 198 | WP_301675322.1 | helix-turn-helix transcriptional regulator | - |
| QYM42_RS02370 (QYM42_02370) | - | 470476..470691 (+) | 216 | WP_010905687.1 | DUF1408 domain-containing protein | - |
| QYM42_RS02375 (QYM42_02375) | bet | 470815..471552 (+) | 738 | WP_301675323.1 | phage recombination protein Bet | - |
| QYM42_RS02380 (QYM42_02380) | - | 471554..472633 (+) | 1080 | WP_301675324.1 | DUF1351 domain-containing protein | - |
| QYM42_RS02385 (QYM42_02385) | ssb | 472626..473051 (+) | 426 | WP_301675325.1 | single-stranded DNA-binding protein | Machinery gene |
| QYM42_RS02390 (QYM42_02390) | - | 473178..473504 (+) | 327 | WP_180259873.1 | HNH endonuclease | - |
| QYM42_RS02395 (QYM42_02395) | - | 473504..474268 (+) | 765 | WP_301675326.1 | helix-turn-helix domain-containing protein | - |
| QYM42_RS02400 (QYM42_02400) | - | 474262..474528 (+) | 267 | WP_301675327.1 | hypothetical protein | - |
| QYM42_RS02405 (QYM42_02405) | - | 474579..474773 (+) | 195 | WP_301675328.1 | hypothetical protein | - |
| QYM42_RS02410 (QYM42_02410) | - | 474811..475113 (+) | 303 | WP_301675329.1 | hypothetical protein | - |
| QYM42_RS02415 (QYM42_02415) | - | 475131..475541 (+) | 411 | WP_301675330.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QYM42_RS02420 (QYM42_02420) | - | 475534..475740 (+) | 207 | WP_301675331.1 | hypothetical protein | - |
| QYM42_RS02425 (QYM42_02425) | - | 475750..476433 (+) | 684 | WP_301675332.1 | hypothetical protein | - |
| QYM42_RS02430 (QYM42_02430) | - | 476458..476907 (+) | 450 | WP_301675333.1 | DUF3850 domain-containing protein | - |
| QYM42_RS02435 (QYM42_02435) | - | 476904..477239 (+) | 336 | WP_301675334.1 | hypothetical protein | - |
| QYM42_RS02440 (QYM42_02440) | - | 477232..477588 (+) | 357 | WP_301675335.1 | hypothetical protein | - |
| QYM42_RS02445 (QYM42_02445) | - | 478327..478623 (+) | 297 | WP_301675336.1 | hypothetical protein | - |
| QYM42_RS02450 (QYM42_02450) | - | 478620..478880 (+) | 261 | WP_301675337.1 | hypothetical protein | - |
| QYM42_RS02455 (QYM42_02455) | - | 478880..479077 (+) | 198 | WP_301675377.1 | DUF1660 family phage protein | - |
| QYM42_RS02460 (QYM42_02460) | - | 479436..479645 (+) | 210 | WP_301675272.1 | hypothetical protein | - |
| QYM42_RS02465 (QYM42_02465) | - | 479723..480148 (+) | 426 | WP_058203511.1 | RinA family protein | - |
| QYM42_RS02470 (QYM42_02470) | - | 480377..480892 (+) | 516 | WP_270331753.1 | HNH endonuclease | - |
| QYM42_RS02475 (QYM42_02475) | - | 481020..481475 (+) | 456 | WP_270225268.1 | phage terminase small subunit P27 family | - |
| QYM42_RS02480 (QYM42_02480) | - | 481465..483375 (+) | 1911 | WP_301675378.1 | terminase large subunit | - |
| QYM42_RS02485 (QYM42_02485) | - | 483344..483553 (+) | 210 | WP_015966929.1 | DUF1056 family protein | - |
| QYM42_RS02490 (QYM42_02490) | - | 483550..484728 (+) | 1179 | WP_014735131.1 | phage portal protein | - |
| QYM42_RS02495 (QYM42_02495) | - | 484774..485478 (+) | 705 | WP_002819795.1 | head maturation protease, ClpP-related | - |
| QYM42_RS02500 (QYM42_02500) | - | 485490..486767 (+) | 1278 | WP_301675338.1 | phage major capsid protein | - |
| QYM42_RS02505 (QYM42_02505) | - | 486783..487649 (+) | 867 | WP_301675339.1 | hypothetical protein | - |
| QYM42_RS02510 (QYM42_02510) | - | 487633..487953 (+) | 321 | WP_301675340.1 | head-tail connector protein | - |
| QYM42_RS02515 (QYM42_02515) | - | 487931..488281 (+) | 351 | WP_301675341.1 | phage head closure protein | - |
| QYM42_RS02520 (QYM42_02520) | - | 488283..488777 (+) | 495 | WP_301675342.1 | HK97 gp10 family phage protein | - |
| QYM42_RS02525 (QYM42_02525) | - | 488777..489172 (+) | 396 | WP_301675343.1 | DUF806 family protein | - |
| QYM42_RS02530 (QYM42_02530) | - | 489204..489779 (+) | 576 | Protein_484 | phage tail protein | - |
| QYM42_RS02535 (QYM42_02535) | - | 489989..490348 (+) | 360 | WP_301675345.1 | phage tail tube assembly chaperone | - |
| QYM42_RS02540 (QYM42_02540) | - | 490417..490554 (+) | 138 | WP_301675346.1 | hypothetical protein | - |
| QYM42_RS02545 (QYM42_02545) | - | 490568..495682 (+) | 5115 | WP_301675347.1 | phage tail tape measure protein | - |
| QYM42_RS02550 (QYM42_02550) | - | 495679..497328 (+) | 1650 | WP_301675348.1 | distal tail protein Dit | - |
| QYM42_RS02555 (QYM42_02555) | - | 497328..499973 (+) | 2646 | WP_301675349.1 | hypothetical protein | - |
| QYM42_RS02560 (QYM42_02560) | - | 499988..500113 (+) | 126 | WP_301675350.1 | hypothetical protein | - |
| QYM42_RS02565 (QYM42_02565) | - | 500126..500437 (+) | 312 | WP_301675351.1 | hypothetical protein | - |
| QYM42_RS02570 (QYM42_02570) | - | 500439..500924 (+) | 486 | WP_301675352.1 | phage holin | - |
| QYM42_RS02575 (QYM42_02575) | - | 500926..501783 (+) | 858 | WP_301675353.1 | GH25 family lysozyme | - |
| QYM42_RS02580 (QYM42_02580) | - | 501865..502143 (+) | 279 | WP_301675354.1 | hypothetical protein | - |
| QYM42_RS02585 (QYM42_02585) | - | 502222..502398 (+) | 177 | WP_301675258.1 | hypothetical protein | - |
| QYM42_RS02590 (QYM42_02590) | - | 502481..504091 (+) | 1611 | WP_301675355.1 | SIR2 family protein | - |
| QYM42_RS02595 (QYM42_02595) | - | 504868..505230 (-) | 363 | WP_301675356.1 | aldo/keto reductase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15727.42 Da Isoelectric Point: 5.8808
>NTDB_id=853922 QYM42_RS02385 WP_301675325.1 472626..473051(+) (ssb) [Lactococcus lactis strain ZZ-2]
MINNVTLVGRITKEPELRYTQQNKAVASFTLAVNRQFKNSNGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGKPTANQSNSDPFGSSPMEISDDDMPF
MINNVTLVGRITKEPELRYTQQNKAVASFTLAVNRQFKNSNGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGKPTANQSNSDPFGSSPMEISDDDMPF
Nucleotide
Download Length: 426 bp
>NTDB_id=853922 QYM42_RS02385 WP_301675325.1 472626..473051(+) (ssb) [Lactococcus lactis strain ZZ-2]
ATGATTAATAATGTCACATTAGTGGGGCGAATCACTAAAGAGCCCGAATTAAGATATACACAACAAAATAAGGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTCCAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGCAGTATTCAAACTCGC
AACTATGAGAATCAACAAGGGCAACGAGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTTGAAAAAAGTAA
TCAAGCAAATGGAGAGCGAGTAGGTAAACCAACTGCTAATCAATCAAACTCTGACCCATTCGGCAGTTCTCCTATGGAAA
TATCTGATGATGATATGCCATTTTAG
ATGATTAATAATGTCACATTAGTGGGGCGAATCACTAAAGAGCCCGAATTAAGATATACACAACAAAATAAGGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAGAATTCCAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTACTGGCAGTATTCAAACTCGC
AACTATGAGAATCAACAAGGGCAACGAGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTTGAAAAAAGTAA
TCAAGCAAATGGAGAGCGAGTAGGTAAACCAACTGCTAATCAATCAAACTCTGACCCATTCGGCAGTTCTCCTATGGAAA
TATCTGATGATGATATGCCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.645 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.419 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.553 |
100 |
0.426 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.731 |
73.759 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.844 |
100 |
0.418 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
37.589 |
100 |
0.376 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
50.485 |
73.05 |
0.369 |