Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QYL87_RS09935 Genome accession   NZ_CP129461
Coordinates   2133583..2135733 (-) Length   716 a.a.
NCBI ID   WP_301404565.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain N13-1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2128583..2140733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYL87_RS09920 recQ 2128731..2130512 (-) 1782 WP_014614539.1 DNA helicase RecQ -
  QYL87_RS09925 - 2130522..2132399 (-) 1878 WP_015728743.1 ABC-F family ATP-binding cassette domain-containing protein -
  QYL87_RS09930 - 2132511..2133326 (+) 816 WP_015728742.1 ZIP family metal transporter -
  QYL87_RS09935 comA 2133583..2135733 (-) 2151 WP_301404565.1 peptide cleavage/export ABC transporter Regulator
  QYL87_RS09940 - 2136108..2136416 (-) 309 WP_063284913.1 DUF3884 family protein -
  QYL87_RS09945 - 2136491..2137621 (-) 1131 WP_301404569.1 glycosyltransferase -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 81701.45 Da        Isoelectric Point: 9.8385

>NTDB_id=853549 QYL87_RS09935 WP_301404565.1 2133583..2135733(-) (comA) [Staphylococcus pseudintermedius strain N13-1]
MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRTTVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDV
QYPFIVHVKKNNNHFHYYVVIRCDKKYIYIADPDPVVNLTKMTYREFKEEWTGVTILLKPTSLYKPIKQDKVRLTSFIPL
LLKEKRLIIKIIIISILVNMINILGSYFMKSIIDFYIPQKLKTWVSMISMALIASYIIQQILSYLQKYFLILLVKTYSIN
ILSPYIKHLFRLPITFFETRRAGDILSRLNDANSITDALASTMLSLFLDVTIIVGISIFLYYQSTILFVLILIIIPIYAV
IVFGFMNSFERKRIKSMEANATLSSYLMENITGMETIKALTCEKKCYKQIKYNFSNYYEKTFLLNKLNIKQNVLKKVVQL
ILNVSILWVGANLVIDNQISIGTLLVFNSLVIYFMNPIENIMNLQLKLQIAGVANNRLNEIFTVKSEFEKNKLDIKLNQN
SSKLIFSNISYGYVYEKEILTDINITIEHNSKVAFIGESGSGKTTLAKLMVSFFESSKGKITLGGLDITNINKSVLRQQI
IYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMVELKSFIDSLPLGLDSVLSSDFSALSGGQRQKIALARALLTNS
SILIMDEATSNIDILTERKIINNLMALNKTIIFISHNLNITQKVDKIFVLAKGKIIEEGSHEFLLKAKGYYSNLIN

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=853549 QYL87_RS09935 WP_301404565.1 2133583..2135733(-) (comA) [Staphylococcus pseudintermedius strain N13-1]
ATGAAATTTTCAAAACGATTTTATCGTGCACAAGTAGATTCTCAAGATTGTGGCGCGGCAGCGCTCGCTATGATATTAGA
ATTTTACGGTTCTCACTATTCTTTGGATTTTCTGAGAAGAAAGTTAAGAACAACAGTAAATGGCACTACAGCATATGGTT
TGGTTCAGGTAGCAGATAAGTTAGGTTTTGAGACAGTTCCTATTAAAGCAGATATATCTTTGTTTGAAATTGATGATGTA
CAGTATCCTTTTATCGTTCATGTTAAAAAAAATAACAATCATTTTCACTATTATGTTGTAATTAGATGTGATAAAAAGTA
TATCTATATAGCTGACCCTGACCCTGTTGTTAATTTAACAAAGATGACTTATAGGGAATTTAAAGAAGAGTGGACTGGAG
TTACAATCTTATTAAAACCTACATCTTTATATAAACCTATAAAGCAAGATAAAGTTCGTTTAACTTCTTTTATACCTTTA
TTATTAAAAGAAAAAAGGTTGATTATAAAAATAATAATTATTTCCATTTTAGTCAATATGATAAATATTTTAGGTTCATA
TTTTATGAAGTCAATTATTGATTTTTATATTCCGCAAAAGTTAAAAACATGGGTTAGTATGATTTCCATGGCTTTAATTG
CTTCTTACATTATACAACAAATTCTTAGTTATTTGCAGAAATATTTTTTGATTTTATTAGTAAAGACATATTCTATAAAT
ATACTTTCACCATACATTAAACATTTGTTTAGATTACCTATTACTTTTTTTGAAACGAGAAGAGCAGGAGACATACTATC
AAGACTTAATGATGCAAATTCAATTACTGACGCTTTAGCTAGTACCATGCTATCATTGTTTTTAGATGTTACAATAATAG
TTGGAATATCTATCTTCCTGTATTATCAAAGTACTATTTTATTTGTATTAATATTAATTATCATTCCTATTTATGCCGTA
ATTGTTTTTGGTTTTATGAACTCTTTTGAACGGAAAAGAATAAAATCTATGGAGGCAAATGCTACTTTGTCTTCTTATTT
GATGGAAAATATAACAGGTATGGAGACGATAAAAGCACTGACATGTGAAAAGAAATGCTATAAGCAGATAAAATATAATT
TTTCGAATTATTACGAAAAAACATTCTTGTTAAACAAACTAAATATAAAGCAAAACGTTTTGAAAAAGGTTGTTCAATTA
ATATTAAATGTATCGATTTTATGGGTAGGCGCTAACCTAGTTATAGATAATCAAATCTCAATTGGAACTTTGCTTGTTTT
TAATTCATTAGTGATTTACTTTATGAATCCAATAGAAAATATTATGAATTTACAGCTTAAATTACAAATAGCAGGTGTGG
CTAATAATCGATTGAATGAAATATTCACAGTTAAATCAGAATTTGAAAAGAATAAATTGGATATCAAATTGAACCAAAAC
TCAAGTAAACTTATATTTTCAAATATTTCATATGGATATGTGTACGAAAAAGAAATCCTTACAGATATTAATATAACAAT
AGAACATAATAGTAAAGTAGCCTTTATTGGAGAGTCTGGATCAGGTAAAACAACTTTGGCGAAATTGATGGTTAGTTTTT
TTGAATCTTCAAAGGGTAAAATAACACTAGGTGGATTGGACATAACAAATATCAATAAATCTGTTTTACGACAGCAGATT
ATATACATTCCACAACAAACTTATATTTTTAATGGAACTATACTTGAAAATCTTTTATTAGGGGTAGTTAAAGAGGTTAC
GCAAAAGGACATAGATAGTGCTATTAAAATGGTTGAACTAAAATCCTTTATTGATAGCTTACCACTTGGACTTGATAGTG
TATTAAGTTCTGATTTTTCTGCTTTGTCAGGAGGTCAGCGGCAGAAGATAGCTTTAGCAAGAGCACTATTAACAAATTCT
TCTATATTGATAATGGATGAAGCAACGAGTAATATTGATATACTCACGGAGAGAAAAATTATTAATAATTTGATGGCGTT
AAATAAAACTATTATATTTATCTCCCATAATCTAAATATAACTCAAAAAGTAGATAAAATATTTGTTTTAGCAAAAGGAA
AAATTATAGAAGAGGGCTCACATGAATTTTTATTAAAAGCAAAAGGTTACTATTCTAACTTAATTAATTAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-141)

ABC transporter (ABC_tran)

(500-650)

ABC transporter transmembrane region (ABC_membrane)

(169-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.073

100

0.531
  comA Streptococcus mitis NCTC 12261

52.933

100

0.529
  comA Streptococcus gordonii str. Challis substr. CH1

52.793

100

0.528
  comA Streptococcus pneumoniae R6

52.514

100

0.525
  comA Streptococcus pneumoniae Rx1

52.514

100

0.525
  comA Streptococcus pneumoniae D39

52.514

100

0.525
  comA Streptococcus pneumoniae TIGR4

52.235

100

0.522
  comA/nlmT Streptococcus mutans UA159

48.889

100

0.492