Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V6T01_RS00355 Genome accession   NZ_CP145856
Coordinates   58770..60035 (+) Length   421 a.a.
NCBI ID   WP_410533800.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 53770..65035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS00325 (V6T01_00325) - 54093..54530 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6T01_RS00330 (V6T01_00330) - 54709..55014 (+) 306 WP_410541266.1 hypothetical protein -
  V6T01_RS00335 (V6T01_00335) hexB 55066..57009 (+) 1944 WP_410541265.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6T01_RS00340 (V6T01_00340) - 57141..57362 (+) 222 WP_073690141.1 hypothetical protein -
  V6T01_RS00345 (V6T01_00345) ruvA 57520..58110 (+) 591 WP_013989915.1 Holliday junction branch migration protein RuvA Machinery gene
  V6T01_RS00350 (V6T01_00350) - 58119..58673 (+) 555 WP_073951167.1 DNA-3-methyladenine glycosylase I -
  V6T01_RS00355 (V6T01_00355) cinA 58770..60035 (+) 1266 WP_410533800.1 competence/damage-inducible protein A Machinery gene
  V6T01_RS00360 (V6T01_00360) recA 60076..61215 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6T01_RS00365 (V6T01_00365) spx 61383..61781 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45613.88 Da        Isoelectric Point: 5.9567

>NTDB_id=852898 V6T01_RS00355 WP_410533800.1 58770..60035(+) (cinA) [Streptococcus salivarius strain KSS1]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLEQASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKKLVFDEEASKKLDSFFATRLKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGVITTQGVTYVVLPGPPSELKPM
VNQELVPALTENHASLYSRVLRFFGVGESQLVTILKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSREEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFETFRLLKNHGKTITAAESLTAGLFQASIADFSGASQVLKGGFVTYSIEEKSKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQETT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=852898 V6T01_RS00355 WP_410533800.1 58770..60035(+) (cinA) [Streptococcus salivarius strain KSS1]
ATGAAAGCTGAATTGATTGCAGTAGGAACCGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATCGATGTGTATTTTCACACAGCAGTAGGAGACAATGAAAACCGCCTACTCTCAGTTCTAG
AACAAGCTAGTAAACGTAGTGACTTAGTCATACTTTGTGGTGGACTTGGCCCTACGGAGGACGATTTAACCAAGCAAACC
CTAGCTAAGTTCTTAGGAAAAAAACTTGTTTTTGATGAGGAGGCAAGTAAAAAGCTGGACAGTTTCTTTGCTACTCGCCT
TAAACACACACGAACGCCTAATAATGAACGTCAAGCGCAAATTGTTGAGGGGGCTATCCCCTTGCAAAATCCTACAGGTC
TTGCAGTTGGAGGCGTCATTACTACTCAAGGGGTGACCTATGTAGTCCTACCTGGGCCACCAAGTGAACTTAAACCTATG
GTGAATCAGGAACTTGTTCCAGCACTTACTGAGAATCACGCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTGGTGACTATTCTGAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCACGAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCTACTAAAACTCTAGATGGCAAATCCTTATCTGATTTTATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAACTTTCCGTTTGCTTAAGAACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGAGCCTCACAAGTATTAAAAGGCGGCTTTGTTACTTACAGCATTGAAGAAAAATCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCCCG
AGCTAAAACAGATAGCGATTACGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CAGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCCTTATTACAAGAGACAACTTGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(264-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.463

99.525

0.741
  cinA Streptococcus mitis NCTC 12261

73.747

99.525

0.734
  cinA Streptococcus pneumoniae TIGR4

73.508

99.525

0.732
  cinA Streptococcus pneumoniae R36A

73.27

99.525

0.729
  cinA Streptococcus pneumoniae Rx1

73.27

99.525

0.729
  cinA Streptococcus pneumoniae R6

73.27

99.525

0.729
  cinA Streptococcus pneumoniae D39

73.031

99.525

0.727
  cinA Streptococcus mutans UA159

70.504

99.05

0.698
  cinA Streptococcus suis isolate S10

55.048

98.812

0.544
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

100

0.449