Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   V6T01_RS00345 Genome accession   NZ_CP145856
Coordinates   57520..58110 (+) Length   196 a.a.
NCBI ID   WP_013989915.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 52520..63110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS00320 (V6T01_00320) - 53641..54096 (-) 456 WP_060972120.1 DUF3021 domain-containing protein -
  V6T01_RS00325 (V6T01_00325) - 54093..54530 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  V6T01_RS00330 (V6T01_00330) - 54709..55014 (+) 306 WP_410541266.1 hypothetical protein -
  V6T01_RS00335 (V6T01_00335) hexB 55066..57009 (+) 1944 WP_410541265.1 DNA mismatch repair endonuclease MutL Machinery gene
  V6T01_RS00340 (V6T01_00340) - 57141..57362 (+) 222 WP_073690141.1 hypothetical protein -
  V6T01_RS00345 (V6T01_00345) ruvA 57520..58110 (+) 591 WP_013989915.1 Holliday junction branch migration protein RuvA Machinery gene
  V6T01_RS00350 (V6T01_00350) - 58119..58673 (+) 555 WP_073951167.1 DNA-3-methyladenine glycosylase I -
  V6T01_RS00355 (V6T01_00355) cinA 58770..60035 (+) 1266 WP_410533800.1 competence/damage-inducible protein A Machinery gene
  V6T01_RS00360 (V6T01_00360) recA 60076..61215 (+) 1140 WP_002889600.1 recombinase RecA Machinery gene
  V6T01_RS00365 (V6T01_00365) spx 61383..61781 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21724.18 Da        Isoelectric Point: 5.6710

>NTDB_id=852897 V6T01_RS00345 WP_013989915.1 57520..58110(+) (ruvA) [Streptococcus salivarius strain KSS1]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTIPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=852897 V6T01_RS00345 WP_013989915.1 57520..58110(+) (ruvA) [Streptococcus salivarius strain KSS1]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGTTATAT
TGTCACTGTAGCGAACCCATATAGTTTTTCTGACCAGATGAATCAGACTATCCAAGTCTACCTTCATCAGGTTATTAGGG
ATGACGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTGAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTGGCTGCCATTGATAATAGTGACATCAA
GTACCTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCCCAGCAAATGGTTTTGGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGATACCAAGTCAACCTGAAGGAAATCATCAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAAATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.5

100

0.668
  ruvA Streptococcus pneumoniae R6

65.5

100

0.668
  ruvA Streptococcus pneumoniae D39

65.5

100

0.668
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.429