Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   QYR55_RS00855 Genome accession   NZ_CP129328
Coordinates   134698..135024 (+) Length   108 a.a.
NCBI ID   WP_367562310.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129698..140024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS00840 (QYR55_00840) - 132363..132728 (+) 366 Protein_118 DUF1033 family protein -
  QYR55_RS00845 (QYR55_00845) comYA 132789..133730 (+) 942 WP_367561726.1 competence type IV pilus ATPase ComGA Machinery gene
  QYR55_RS00850 (QYR55_00850) comYB 133681..134697 (+) 1017 WP_367562762.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYR55_RS00855 (QYR55_00855) comGC/cglC 134698..135024 (+) 327 WP_367562310.1 competence type IV pilus major pilin ComGC Machinery gene
  QYR55_RS00860 (QYR55_00860) comGD 134984..135412 (+) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  QYR55_RS00865 (QYR55_00865) comGE 135420..135677 (+) 258 WP_003098809.1 competence type IV pilus minor pilin ComGE -
  QYR55_RS00870 (QYR55_00870) comGF 135589..136086 (+) 498 WP_394812821.1 competence type IV pilus minor pilin ComGF -
  QYR55_RS00875 (QYR55_00875) comGG 136076..136429 (+) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  QYR55_RS00880 (QYR55_00880) comYH 136491..137447 (+) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  QYR55_RS00885 (QYR55_00885) - 137504..138700 (+) 1197 WP_367562311.1 acetate kinase -
  QYR55_RS00890 (QYR55_00890) - 138823..139026 (+) 204 WP_003098819.1 helix-turn-helix transcriptional regulator -
  QYR55_RS00895 (QYR55_00895) - 139039..139491 (+) 453 WP_003098820.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12181.24 Da        Isoelectric Point: 10.0312

>NTDB_id=852245 QYR55_RS00855 WP_367562310.1 134698..135024(+) (comGC/cglC) [Streptococcus iniae strain Si 1-19]
MKTKCKQLKESRTKAFTLLEMLIVLLIISVLMLLFIPNLSKQKDKVTDAGNVAVVKIVENQAELYELTEGGKASLAQLQS
KGHITDKQAKAYQDYYAKNSDKHRQVNN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=852245 QYR55_RS00855 WP_367562310.1 134698..135024(+) (comGC/cglC) [Streptococcus iniae strain Si 1-19]
ATGAAAACAAAATGTAAACAACTAAAAGAAAGCCGTACTAAAGCTTTCACACTTCTAGAAATGTTGATTGTTTTGCTAAT
TATTAGTGTTCTTATGCTACTGTTTATTCCGAATTTAAGTAAGCAAAAAGATAAGGTTACAGATGCTGGTAATGTCGCAG
TGGTTAAAATTGTTGAAAATCAGGCGGAACTATATGAATTAACGGAAGGTGGGAAAGCAAGCCTCGCTCAACTCCAATCA
AAAGGTCATATTACAGACAAACAAGCGAAGGCTTATCAGGATTATTATGCCAAAAACAGTGACAAGCATAGACAAGTTAA
CAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis SK321

62.376

93.519

0.583
  comGC/cglC Streptococcus pneumoniae D39

58.333

100

0.583
  comGC/cglC Streptococcus pneumoniae R6

58.333

100

0.583
  comGC/cglC Streptococcus pneumoniae TIGR4

58.333

100

0.583
  comGC/cglC Streptococcus pneumoniae Rx1

58.333

100

0.583
  comYC Streptococcus gordonii str. Challis substr. CH1

60.194

95.37

0.574
  comYC Streptococcus mutans UA140

59.223

95.37

0.565
  comYC Streptococcus mutans UA159

59.223

95.37

0.565
  comGC/cglC Streptococcus mitis NCTC 12261

63.736

84.259

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

50.459

100

0.509
  comYC Streptococcus suis isolate S10

59.77

80.556

0.481