Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | QYR55_RS00880 | Genome accession | NZ_CP129328 |
| Coordinates | 136491..137447 (+) | Length | 318 a.a. |
| NCBI ID | WP_003098815.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain Si 1-19 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 131491..142447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYR55_RS00840 (QYR55_00840) | - | 132363..132728 (+) | 366 | Protein_118 | DUF1033 family protein | - |
| QYR55_RS00845 (QYR55_00845) | comYA | 132789..133730 (+) | 942 | WP_367561726.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QYR55_RS00850 (QYR55_00850) | comYB | 133681..134697 (+) | 1017 | WP_367562762.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QYR55_RS00855 (QYR55_00855) | comGC/cglC | 134698..135024 (+) | 327 | WP_367562310.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| QYR55_RS00860 (QYR55_00860) | comGD | 134984..135412 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| QYR55_RS00865 (QYR55_00865) | comGE | 135420..135677 (+) | 258 | WP_003098809.1 | competence type IV pilus minor pilin ComGE | - |
| QYR55_RS00870 (QYR55_00870) | comGF | 135589..136086 (+) | 498 | WP_394812821.1 | competence type IV pilus minor pilin ComGF | - |
| QYR55_RS00875 (QYR55_00875) | comGG | 136076..136429 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| QYR55_RS00880 (QYR55_00880) | comYH | 136491..137447 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| QYR55_RS00885 (QYR55_00885) | - | 137504..138700 (+) | 1197 | WP_367562311.1 | acetate kinase | - |
| QYR55_RS00890 (QYR55_00890) | - | 138823..139026 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| QYR55_RS00895 (QYR55_00895) | - | 139039..139491 (+) | 453 | WP_003098820.1 | hypothetical protein | - |
| QYR55_RS00900 (QYR55_00900) | - | 139501..140157 (+) | 657 | WP_367562312.1 | type II CAAX endopeptidase family protein | - |
| QYR55_RS00905 (QYR55_00905) | proC | 140191..140961 (-) | 771 | WP_367562634.1 | pyrroline-5-carboxylate reductase | - |
| QYR55_RS00910 (QYR55_00910) | pepA | 140985..142052 (-) | 1068 | WP_367562313.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35968.86 Da Isoelectric Point: 4.5568
>NTDB_id=852246 QYR55_RS00880 WP_003098815.1 136491..137447(+) (comYH) [Streptococcus iniae strain Si 1-19]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=852246 QYR55_RS00880 WP_003098815.1 136491..137447(+) (comYH) [Streptococcus iniae strain Si 1-19]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |