Detailed information NTG0852244

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QYR55_RS00850
• Genome accession: NZ_CP129328
• Coordinates: 133681..134697 (+)
• Length: 338 a.a.
• NCBI ID: WP_367562762.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain Si 1-19
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 128681..139697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYR55_RS00840 (QYR55_00840)	-	132363..132728 (+)	366	Protein_118	DUF1033 family protein	-
QYR55_RS00845 (QYR55_00845)	comYA	132789..133730 (+)	942	WP_367561726.1	competence type IV pilus ATPase ComGA	Machinery gene
QYR55_RS00850 (QYR55_00850)	comYB	133681..134697 (+)	1017	WP_367562762.1	competence type IV pilus assembly protein ComGB	Machinery gene
QYR55_RS00855 (QYR55_00855)	comGC/cglC	134698..135024 (+)	327	WP_367562310.1	competence type IV pilus major pilin ComGC	Machinery gene
QYR55_RS00860 (QYR55_00860)	comGD	134984..135412 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
QYR55_RS00865 (QYR55_00865)	comGE	135420..135677 (+)	258	WP_003098809.1	competence type IV pilus minor pilin ComGE	-
QYR55_RS00870 (QYR55_00870)	comGF	135589..136086 (+)	498	WP_394812821.1	competence type IV pilus minor pilin ComGF	-
QYR55_RS00875 (QYR55_00875)	comGG	136076..136429 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
QYR55_RS00880 (QYR55_00880)	comYH	136491..137447 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
QYR55_RS00885 (QYR55_00885)	-	137504..138700 (+)	1197	WP_367562311.1	acetate kinase	-
QYR55_RS00890 (QYR55_00890)	-	138823..139026 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
QYR55_RS00895 (QYR55_00895)	-	139039..139491 (+)	453	WP_003098820.1	hypothetical protein	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 39220.41 Da
• Isoelectric Point: 9.6521

>NTDB_id=852244 QYR55_RS00850 WP_367562762.1 133681..134697(+) (comYB) [Streptococcus iniae strain Si 1-19]
MDISLSKKSKQRKLSAKKQYQLMQLFHNLFASGFSLSEIVAFLEKSHLLEAKYLDRIKENLISGRSLAEMTRSLGYPDSI
VTQISFADIHGNTKESLFKIMHYLDKVAQVRKKTLEVLTYPLILLSFLIAIMFGLRHYLLPQIEESNGLTQFLTYFPLVF
LIFLILGLLLTFYLSIRWRKHSQLKQVKQFSRIPFLKDYISLYITAYFAREWGSLMGQGLELSSILTVMAKEQSPLVKEI
GQDMQAYFLEGGALHDKVLQYPFFQKELSLMIEYGDIKAKLGQELEIYAQLTWERFFSRLFQATQWIQPIIFLFVALIIV
CIYAPMLLPMYHSIGGSI

Nucleotide

• Length: 1017 bp

>NTDB_id=852244 QYR55_RS00850 WP_367562762.1 133681..134697(+) (comYB) [Streptococcus iniae strain Si 1-19]
ATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAAAAAGCAGTATCAATTAATGCAACTCTTTCA
TAATTTATTTGCAAGTGGTTTTAGCTTATCTGAAATAGTGGCATTTTTAGAAAAAAGTCACTTATTGGAAGCAAAATACC
TTGATAGAATAAAAGAAAACCTCATCAGTGGACGAAGTTTAGCAGAAATGACTAGAAGTTTAGGTTATCCTGACAGTATT
GTAACGCAAATTAGTTTTGCAGATATTCATGGCAATACCAAGGAAAGCTTGTTTAAAATTATGCATTACCTTGATAAAGT
GGCACAAGTCAGGAAAAAAACATTAGAAGTCCTAACTTATCCTCTTATTTTGCTTAGTTTTTTAATAGCCATCATGTTTG
GCTTACGCCATTATCTGCTTCCTCAAATAGAGGAGTCTAATGGGCTTACTCAATTTTTGACTTACTTCCCTTTAGTTTTT
TTGATTTTCTTAATATTGGGATTGCTACTCACATTTTACTTGAGCATTAGGTGGCGAAAACACTCACAATTAAAACAAGT
CAAGCAGTTTAGTCGGATACCTTTTTTAAAAGACTATATTAGCCTATATATAACTGCCTATTTTGCGCGTGAATGGGGAA
GTTTAATGGGACAAGGCCTTGAGTTGAGTTCAATACTAACCGTTATGGCAAAAGAACAATCTCCTCTGGTAAAAGAAATC
GGCCAAGATATGCAGGCCTATTTTTTAGAGGGTGGTGCTTTGCATGACAAAGTGTTACAATACCCATTTTTTCAAAAGGA
ATTAAGCTTAATGATTGAATATGGAGATATCAAGGCTAAATTAGGTCAAGAATTAGAAATTTATGCTCAACTAACATGGG
AAAGATTCTTTAGTCGCTTATTTCAAGCGACACAATGGATTCAACCTATTATATTCTTATTTGTTGCACTTATTATTGTG
TGCATTTACGCGCCAATGCTTTTGCCCATGTATCATTCAATTGGAGGTTCTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (24-141)

• Type II secretion system (T2SS), protein F (T2SSF) (208-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	51.952	98.521	0.512
comYB	Streptococcus mutans UA159	51.952	98.521	0.512
comGB/cglB	Streptococcus mitis NCTC 12261	48.378	100	0.485
comGB/cglB	Streptococcus mitis SK321	47.904	98.817	0.473
comYB	Streptococcus gordonii str. Challis substr. CH1	47.748	98.521	0.47
comGB/cglB	Streptococcus pneumoniae Rx1	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae D39	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae R6	46.108	98.817	0.456
comGB/cglB	Streptococcus pneumoniae TIGR4	46.108	98.817	0.456
comGB	Lactococcus lactis subsp. cremoris KW2	43.243	98.521	0.426