Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   QYR55_RS00845 Genome accession   NZ_CP129328
Coordinates   132789..133730 (+) Length   313 a.a.
NCBI ID   WP_367561726.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 1-19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127789..138730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR55_RS00835 (QYR55_00835) rpoC 128610..132244 (+) 3635 Protein_117 DNA-directed RNA polymerase subunit beta' -
  QYR55_RS00840 (QYR55_00840) - 132363..132728 (+) 366 Protein_118 DUF1033 family protein -
  QYR55_RS00845 (QYR55_00845) comYA 132789..133730 (+) 942 WP_367561726.1 competence type IV pilus ATPase ComGA Machinery gene
  QYR55_RS00850 (QYR55_00850) comYB 133681..134697 (+) 1017 WP_367562762.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYR55_RS00855 (QYR55_00855) comGC/cglC 134698..135024 (+) 327 WP_367562310.1 competence type IV pilus major pilin ComGC Machinery gene
  QYR55_RS00860 (QYR55_00860) comGD 134984..135412 (+) 429 WP_003098807.1 competence type IV pilus minor pilin ComGD -
  QYR55_RS00865 (QYR55_00865) comGE 135420..135677 (+) 258 WP_003098809.1 competence type IV pilus minor pilin ComGE -
  QYR55_RS00870 (QYR55_00870) comGF 135589..136086 (+) 498 WP_394812821.1 competence type IV pilus minor pilin ComGF -
  QYR55_RS00875 (QYR55_00875) comGG 136076..136429 (+) 354 WP_003098812.1 competence type IV pilus minor pilin ComGG -
  QYR55_RS00880 (QYR55_00880) comYH 136491..137447 (+) 957 WP_003098815.1 class I SAM-dependent methyltransferase Machinery gene
  QYR55_RS00885 (QYR55_00885) - 137504..138700 (+) 1197 WP_367562311.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35957.10 Da        Isoelectric Point: 7.4276

>NTDB_id=852243 QYR55_RS00845 WP_367561726.1 132789..133730(+) (comYA) [Streptococcus iniae strain Si 1-19]
MIQSLGKEVIKMADDLKAQDIYIIPEGDDYKIHMRIDGERRRIESFDGAQMPQLISHFKYLSGMNVGEKRRCQLGACDYQ
YGAKNDISLRLSTVGDYRGKESLVIRLLHHQNRSLSFWFDREKELAEQVTRRGLYLFSGPVGSGKTSLMYQLLAKDSKQK
QIITIEDPVEIKDTRMLQLQVNDSIGTTYDNLIKLSLRHRPDVLIIGEIRDTETARATIRASLTGSVVFSTIHAKSIKGV
YERLIELGISREEVTQTLQLVVYQRLLGGRGLIDFTRKGFENYQQEQWNKDLDQLFADGYLTEQEIQTEKIIS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=852243 QYR55_RS00845 WP_367561726.1 132789..133730(+) (comYA) [Streptococcus iniae strain Si 1-19]
ATGATTCAAAGCTTAGGAAAAGAAGTGATTAAAATGGCAGATGACTTGAAGGCTCAGGACATATATATTATTCCAGAGGG
CGATGATTACAAGATTCATATGCGTATTGATGGAGAAAGAAGACGCATTGAATCTTTTGATGGCGCACAGATGCCTCAAC
TCATCAGTCACTTTAAATATCTATCGGGAATGAATGTTGGCGAAAAACGTCGATGCCAACTTGGCGCCTGTGATTACCAA
TATGGTGCTAAAAATGACATATCGCTTCGACTATCAACAGTTGGAGATTATCGTGGGAAGGAAAGTTTAGTAATCAGGCT
TTTACACCACCAAAACAGGTCCTTATCTTTTTGGTTTGATAGGGAAAAGGAATTGGCCGAGCAAGTCACCAGACGAGGAC
TTTATTTATTTTCAGGCCCCGTTGGTTCCGGTAAAACGAGTTTAATGTATCAACTTCTAGCAAAGGATTCTAAACAAAAG
CAAATCATCACTATTGAAGATCCCGTTGAGATTAAGGACACAAGAATGCTACAGTTGCAAGTAAATGACAGTATTGGAAC
GACATATGATAATTTAATTAAATTATCTTTGCGTCATCGTCCAGATGTTCTCATTATTGGTGAAATTAGAGACACTGAGA
CAGCTAGAGCGACCATTAGAGCAAGTTTAACTGGTAGTGTCGTCTTTTCCACCATACATGCTAAAAGCATCAAGGGTGTC
TATGAGAGATTAATTGAATTAGGAATCTCTAGAGAAGAAGTGACACAAACACTTCAACTTGTTGTTTATCAACGGCTACT
TGGTGGTCGAGGCTTAATTGACTTTACACGAAAGGGGTTTGAAAACTATCAACAAGAGCAGTGGAATAAAGACTTGGATC
AACTTTTTGCGGATGGATATCTCACTGAGCAAGAAATCCAAACAGAGAAAATTATCAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(14-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

62.058

99.361

0.617
  comYA Streptococcus mutans UA159

62.058

99.361

0.617
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.29

99.042

0.607
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.807

99.361

0.594
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.486

99.361

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.486

99.361

0.591
  comYA Streptococcus gordonii str. Challis substr. CH1

58.842

99.361

0.585
  comGA Lactococcus lactis subsp. cremoris KW2

53.376

99.361

0.53