Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLNCDO702_RS02505 | Genome accession | NZ_CP129159 |
| Coordinates | 483608..484033 (+) | Length | 141 a.a. |
| NCBI ID | WP_015967987.1 | Uniprot ID | A0A1V0NDX0 |
| Organism | Lactococcus lactis subsp. lactis strain NCDO702 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 478608..489033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLNCDO702_RS02445 | - | 479021..479221 (-) | 201 | WP_371400164.1 | hypothetical protein | - |
| LLNCDO702_RS02450 (LLNCDO702_02460) | - | 479384..479746 (-) | 363 | WP_081144188.1 | hypothetical protein | - |
| LLNCDO702_RS02455 (LLNCDO702_02465) | - | 479784..479993 (+) | 210 | WP_081144190.1 | hypothetical protein | - |
| LLNCDO702_RS02460 (LLNCDO702_02470) | - | 480018..480248 (+) | 231 | WP_015966797.1 | helix-turn-helix transcriptional regulator | - |
| LLNCDO702_RS02465 (LLNCDO702_02475) | - | 480260..480478 (+) | 219 | WP_011834773.1 | hypothetical protein | - |
| LLNCDO702_RS02470 (LLNCDO702_02480) | - | 480488..481201 (+) | 714 | WP_081144192.1 | ORF6C domain-containing protein | - |
| LLNCDO702_RS02475 (LLNCDO702_02485) | - | 481214..481546 (+) | 333 | WP_081144194.1 | DUF771 domain-containing protein | - |
| LLNCDO702_RS02480 (LLNCDO702_02490) | - | 481684..481908 (+) | 225 | WP_032399005.1 | hypothetical protein | - |
| LLNCDO702_RS02485 (LLNCDO702_02495) | - | 481905..482099 (+) | 195 | WP_081144195.1 | hypothetical protein | - |
| LLNCDO702_RS02490 (LLNCDO702_02500) | - | 482109..482351 (+) | 243 | WP_032399006.1 | hypothetical protein | - |
| LLNCDO702_RS02495 (LLNCDO702_02505) | - | 482453..482848 (+) | 396 | WP_003132838.1 | hypothetical protein | - |
| LLNCDO702_RS02500 (LLNCDO702_02510) | - | 482857..483615 (+) | 759 | WP_081144196.1 | Rad52/Rad22 family DNA repair protein | - |
| LLNCDO702_RS02505 (LLNCDO702_02515) | ssb | 483608..484033 (+) | 426 | WP_015967987.1 | single-stranded DNA-binding protein | Machinery gene |
| LLNCDO702_RS02510 (LLNCDO702_02520) | - | 484158..484940 (+) | 783 | WP_023189114.1 | phage replisome organiser protein | - |
| LLNCDO702_RS02515 (LLNCDO702_02525) | - | 484940..485665 (+) | 726 | WP_081144197.1 | hypothetical protein | - |
| LLNCDO702_RS02520 (LLNCDO702_02530) | - | 485662..486051 (+) | 390 | WP_081144198.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LLNCDO702_RS02525 (LLNCDO702_02535) | - | 486054..486296 (+) | 243 | WP_081144199.1 | DUF1031 family protein | - |
| LLNCDO702_RS02530 (LLNCDO702_02540) | - | 486404..486559 (+) | 156 | WP_081144200.1 | hypothetical protein | - |
| LLNCDO702_RS02535 (LLNCDO702_02545) | - | 486549..487118 (+) | 570 | WP_081144201.1 | DUF658 family protein | - |
| LLNCDO702_RS02540 (LLNCDO702_02550) | - | 487312..487518 (+) | 207 | WP_010905356.1 | DUF1125 domain-containing protein | - |
| LLNCDO702_RS02545 (LLNCDO702_02555) | - | 487511..488203 (+) | 693 | WP_081144202.1 | DUF1642 domain-containing protein | - |
| LLNCDO702_RS02550 (LLNCDO702_02560) | - | 488200..488619 (+) | 420 | WP_081144203.1 | dUTP diphosphatase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15716.47 Da Isoelectric Point: 5.1972
>NTDB_id=851283 LLNCDO702_RS02505 WP_015967987.1 483608..484033(+) (ssb) [Lactococcus lactis subsp. lactis strain NCDO702]
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFISCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERISNPASKPQNNDSFGSDPMEISDDDLPF
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFISCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERISNPASKPQNNDSFGSDPMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=851283 LLNCDO702_RS02505 WP_015967987.1 483608..484033(+) (ssb) [Lactococcus lactis subsp. lactis strain NCDO702]
ATGATTAACAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAACGCTAATGGAGAAAGAGAAGCTGACTTTATCAGTTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAGACTCGA
AACTATGAGAACCAACAAGGGCAGCGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAATTAGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAACAATGTCACTCTAGTAGGGCGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAACGCTAATGGAGAAAGAGAAGCTGACTTTATCAGTTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAGACTCGA
AACTATGAGAACCAACAAGGGCAGCGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAATTAGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.744 |
100 |
0.631 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.553 |
100 |
0.426 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.731 |
73.759 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
39.007 |
100 |
0.39 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
51.456 |
73.05 |
0.376 |