Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QWD88_RS02305 Genome accession   NZ_CP129120
Coordinates   442416..442757 (+) Length   113 a.a.
NCBI ID   WP_003151249.1    Uniprot ID   A0A9Q3LHX6
Organism   Bacillus velezensis strain SRCM126718     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 437416..447757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWD88_RS02270 (QWD88_02270) - 437536..438333 (+) 798 WP_032875991.1 flagellar hook-basal body protein -
  QWD88_RS02275 (QWD88_02275) - 438358..439179 (+) 822 WP_032876942.1 flagellar hook-basal body protein -
  QWD88_RS02280 (QWD88_02280) - 439197..440261 (-) 1065 WP_032875994.1 tetratricopeptide repeat protein -
  QWD88_RS02285 (QWD88_02285) fabZ 440457..440882 (+) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QWD88_RS02290 (QWD88_02290) mscL 440939..441334 (+) 396 WP_003151243.1 large conductance mechanosensitive channel protein MscL -
  QWD88_RS02295 (QWD88_02295) - 441382..441792 (-) 411 WP_032875997.1 YwpF-like family protein -
  QWD88_RS02300 (QWD88_02300) - 441965..442318 (+) 354 WP_003151247.1 hypothetical protein -
  QWD88_RS02305 (QWD88_02305) ssbB 442416..442757 (+) 342 WP_003151249.1 single-stranded DNA-binding protein Machinery gene
  QWD88_RS02310 (QWD88_02310) - 442966..443748 (+) 783 WP_003151250.1 DeoR/GlpR family DNA-binding transcription regulator -
  QWD88_RS02315 (QWD88_02315) - 443745..444602 (+) 858 WP_007614285.1 Cof-type HAD-IIB family hydrolase -
  QWD88_RS02320 (QWD88_02320) - 444715..447489 (-) 2775 WP_032876000.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12661.53 Da        Isoelectric Point: 9.5812

>NTDB_id=851078 QWD88_RS02305 WP_003151249.1 442416..442757(+) (ssbB) [Bacillus velezensis strain SRCM126718]
MFNHVMLVGRLTKDPELRFTSAGIPVAHITLAVNRNFKSASGETGTDFVNCTIWRKNAENTALYCQKGSMVGVSGRIQTR
SYEKTDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=851078 QWD88_RS02305 WP_003151249.1 442416..442757(+) (ssbB) [Bacillus velezensis strain SRCM126718]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACATCAGCGGGCATTCCCGTCGC
TCATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCGGGTGAAACCGGAACCGACTTCGTCAACTGCACCATCT
GGAGGAAAAACGCTGAAAACACGGCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGA
AGTTATGAAAAGACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACG
GAAAGAGCCGCTGGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

76.991

100

0.77
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

93.805

0.496
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.903

100

0.469
  ssbA Streptococcus mutans UA159

42.478

100

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.593

100

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae D39

40.708

100

0.407
  ssbB/cilA Streptococcus pneumoniae R6

40.708

100

0.407
  ssbB/cilA Streptococcus mitis SK321

40.708

100

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

37.5

99.115

0.372