Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QTA68_RS10890 | Genome accession | NZ_CP129005 |
| Coordinates | 2109966..2110301 (+) | Length | 111 a.a. |
| NCBI ID | WP_000982018.1 | Uniprot ID | A0A9W5VT75 |
| Organism | Bacillus cereus strain lycx | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2050141..2112847 | 2109966..2110301 | within | 0 |
Gene organization within MGE regions
Location: 2050141..2112847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QTA68_RS10560 (QTA68_10560) | - | 2050141..2051214 (+) | 1074 | WP_049107464.1 | tetratricopeptide repeat protein | - |
| QTA68_RS10565 (QTA68_10565) | - | 2051211..2051336 (+) | 126 | WP_000709201.1 | aspartate phosphatase | - |
| QTA68_RS10570 (QTA68_10570) | - | 2051761..2052897 (-) | 1137 | WP_290102349.1 | tyrosine-type recombinase/integrase | - |
| QTA68_RS10575 (QTA68_10575) | - | 2052918..2053436 (-) | 519 | WP_088351807.1 | ImmA/IrrE family metallo-endopeptidase | - |
| QTA68_RS10580 (QTA68_10580) | - | 2053887..2054243 (-) | 357 | WP_000004574.1 | helix-turn-helix transcriptional regulator | - |
| QTA68_RS10585 (QTA68_10585) | - | 2054428..2054631 (+) | 204 | WP_016091031.1 | helix-turn-helix transcriptional regulator | - |
| QTA68_RS10590 (QTA68_10590) | - | 2054665..2054964 (+) | 300 | WP_290102350.1 | helix-turn-helix domain-containing protein | - |
| QTA68_RS10595 (QTA68_10595) | - | 2055032..2055547 (+) | 516 | WP_290102351.1 | helix-turn-helix transcriptional regulator | - |
| QTA68_RS10600 (QTA68_10600) | - | 2055578..2055799 (+) | 222 | WP_089607429.1 | RNA polymerase subunit sigma | - |
| QTA68_RS10605 (QTA68_10605) | - | 2055975..2056259 (+) | 285 | WP_290102352.1 | hypothetical protein | - |
| QTA68_RS10610 (QTA68_10610) | - | 2056377..2057354 (+) | 978 | WP_290102353.1 | DnaD domain protein | - |
| QTA68_RS10615 (QTA68_10615) | - | 2057365..2057727 (+) | 363 | WP_106822216.1 | cell division protein SepF | - |
| QTA68_RS10620 (QTA68_10620) | - | 2057799..2057990 (+) | 192 | WP_290102354.1 | DUF3954 domain-containing protein | - |
| QTA68_RS30705 | - | 2058072..2058629 (-) | 558 | WP_353938250.1 | exosporium leader peptide-containing protein | - |
| QTA68_RS10630 (QTA68_10630) | - | 2058909..2059373 (-) | 465 | WP_063222835.1 | hypothetical protein | - |
| QTA68_RS10635 (QTA68_10635) | - | 2060109..2060594 (-) | 486 | WP_290102356.1 | exosporium leader peptide-containing protein | - |
| QTA68_RS30710 | - | 2060775..2060858 (+) | 84 | Protein_2015 | exosporium leader peptide-containing protein | - |
| QTA68_RS10645 (QTA68_10645) | - | 2061198..2061584 (+) | 387 | WP_290102358.1 | hypothetical protein | - |
| QTA68_RS10650 (QTA68_10650) | - | 2062321..2062689 (+) | 369 | WP_290102359.1 | DUF3888 domain-containing protein | - |
| QTA68_RS10655 (QTA68_10655) | - | 2063952..2064113 (+) | 162 | WP_290102360.1 | hypothetical protein | - |
| QTA68_RS10660 (QTA68_10660) | - | 2064141..2064623 (+) | 483 | WP_258125959.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| QTA68_RS10665 (QTA68_10665) | - | 2064623..2065165 (+) | 543 | WP_272512383.1 | site-specific integrase | - |
| QTA68_RS10670 (QTA68_10670) | - | 2065531..2066448 (+) | 918 | WP_290102361.1 | hypothetical protein | - |
| QTA68_RS10675 (QTA68_10675) | - | 2066933..2068396 (+) | 1464 | WP_290102362.1 | peptidase G2 autoproteolytic cleavage domain-containing protein | - |
| QTA68_RS10680 (QTA68_10680) | ltrA | 2069066..2070727 (+) | 1662 | WP_290102206.1 | group II intron reverse transcriptase/maturase | - |
| QTA68_RS10685 (QTA68_10685) | - | 2071250..2071558 (-) | 309 | WP_290102363.1 | WGxxGxxG family protein | - |
| QTA68_RS10690 (QTA68_10690) | - | 2071905..2072420 (+) | 516 | WP_290102364.1 | DUF3231 family protein | - |
| QTA68_RS10695 (QTA68_10695) | - | 2072864..2073000 (-) | 137 | Protein_2026 | DUF3956 domain-containing protein | - |
| QTA68_RS10700 (QTA68_10700) | - | 2073472..2074044 (+) | 573 | WP_290102366.1 | hypothetical protein | - |
| QTA68_RS10705 (QTA68_10705) | - | 2074101..2074280 (+) | 180 | WP_290102367.1 | hypothetical protein | - |
| QTA68_RS10710 (QTA68_10710) | terS | 2074302..2075129 (+) | 828 | WP_290102368.1 | phage terminase small subunit | - |
| QTA68_RS10715 (QTA68_10715) | - | 2075122..2076399 (+) | 1278 | WP_290102369.1 | PBSX family phage terminase large subunit | - |
| QTA68_RS10720 (QTA68_10720) | - | 2076469..2077950 (+) | 1482 | WP_290102370.1 | phage portal protein | - |
| QTA68_RS10725 (QTA68_10725) | - | 2078064..2078582 (+) | 519 | WP_290102371.1 | phage minor head protein | - |
| QTA68_RS10730 (QTA68_10730) | - | 2078696..2079898 (+) | 1203 | WP_290102372.1 | XkdF-like putative serine protease domain-containing protein | - |
| QTA68_RS10735 (QTA68_10735) | - | 2079916..2080902 (+) | 987 | WP_290102373.1 | phage major capsid protein | - |
| QTA68_RS10740 (QTA68_10740) | - | 2081073..2081237 (+) | 165 | WP_290102374.1 | YqbF domain-containing protein | - |
| QTA68_RS10745 (QTA68_10745) | - | 2081237..2081773 (+) | 537 | WP_290102375.1 | hypothetical protein | - |
| QTA68_RS10750 (QTA68_10750) | - | 2081770..2082138 (+) | 369 | WP_290102376.1 | hypothetical protein | - |
| QTA68_RS10755 (QTA68_10755) | - | 2082145..2082555 (+) | 411 | WP_290102377.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QTA68_RS10760 (QTA68_10760) | - | 2082559..2082981 (+) | 423 | WP_000063393.1 | hypothetical protein | - |
| QTA68_RS10765 (QTA68_10765) | - | 2082994..2083596 (+) | 603 | WP_290102378.1 | hypothetical protein | - |
| QTA68_RS10770 (QTA68_10770) | - | 2083654..2084172 (+) | 519 | WP_290102379.1 | hypothetical protein | - |
| QTA68_RS10775 (QTA68_10775) | - | 2084136..2084558 (+) | 423 | WP_290102380.1 | hypothetical protein | - |
| QTA68_RS10780 (QTA68_10780) | - | 2084591..2087527 (+) | 2937 | WP_290102381.1 | phage tail tape measure protein | - |
| QTA68_RS10785 (QTA68_10785) | - | 2087524..2088207 (+) | 684 | WP_088346016.1 | hypothetical protein | - |
| QTA68_RS10790 (QTA68_10790) | - | 2088204..2089751 (+) | 1548 | WP_290102382.1 | hypothetical protein | - |
| QTA68_RS10795 (QTA68_10795) | - | 2089762..2090145 (+) | 384 | WP_021727719.1 | hypothetical protein | - |
| QTA68_RS10800 (QTA68_10800) | - | 2090188..2090562 (+) | 375 | WP_290102383.1 | Low copy number virion structural protein | - |
| QTA68_RS10805 (QTA68_10805) | - | 2090575..2090952 (+) | 378 | WP_017673856.1 | hypothetical protein | - |
| QTA68_RS10810 (QTA68_10810) | - | 2090966..2092303 (+) | 1338 | WP_290102384.1 | hypothetical protein | - |
| QTA68_RS10815 (QTA68_10815) | - | 2092317..2094044 (+) | 1728 | WP_290102385.1 | hypothetical protein | - |
| QTA68_RS10820 (QTA68_10820) | - | 2094068..2096293 (+) | 2226 | WP_290102386.1 | hypothetical protein | - |
| QTA68_RS10825 (QTA68_10825) | - | 2096275..2097780 (+) | 1506 | WP_290102387.1 | cell adhesion protein | - |
| QTA68_RS10830 (QTA68_10830) | - | 2097790..2098173 (+) | 384 | WP_290102388.1 | hypothetical protein | - |
| QTA68_RS10835 (QTA68_10835) | - | 2098187..2099107 (+) | 921 | WP_290102389.1 | hypothetical protein | - |
| QTA68_RS10840 (QTA68_10840) | - | 2099416..2099913 (+) | 498 | WP_000439586.1 | phage holin family protein | - |
| QTA68_RS10845 (QTA68_10845) | - | 2099993..2101051 (+) | 1059 | WP_290102390.1 | N-acetylmuramoyl-L-alanine amidase | - |
| QTA68_RS10850 (QTA68_10850) | - | 2101295..2101431 (+) | 137 | Protein_2057 | DDE-type integrase/transposase/recombinase | - |
| QTA68_RS10855 (QTA68_10855) | - | 2102627..2103886 (+) | 1260 | WP_290102391.1 | exosporium glycoprotein BclB-related protein | - |
| QTA68_RS10860 (QTA68_10860) | - | 2104202..2104530 (+) | 329 | Protein_2059 | ArpU family transcriptional regulator | - |
| QTA68_RS10865 (QTA68_10865) | - | 2105071..2105988 (-) | 918 | WP_290102392.1 | hypothetical protein | - |
| QTA68_RS10870 (QTA68_10870) | - | 2106098..2106745 (+) | 648 | WP_000165965.1 | HD domain-containing protein | - |
| QTA68_RS10875 (QTA68_10875) | - | 2106742..2108637 (+) | 1896 | WP_000783169.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| QTA68_RS10880 (QTA68_10880) | - | 2108713..2109444 (+) | 732 | WP_001260655.1 | Bax inhibitor-1/YccA family protein | - |
| QTA68_RS10885 (QTA68_10885) | - | 2109550..2109804 (+) | 255 | WP_000975137.1 | DUF4318 domain-containing protein | - |
| QTA68_RS10890 (QTA68_10890) | ssbA | 2109966..2110301 (+) | 336 | WP_000982018.1 | single-stranded DNA-binding protein | Machinery gene |
| QTA68_RS10895 (QTA68_10895) | ltrA | 2111186..2112847 (+) | 1662 | WP_290102206.1 | group II intron reverse transcriptase/maturase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12771.61 Da Isoelectric Point: 9.4344
>NTDB_id=850411 QTA68_RS10890 WP_000982018.1 2109966..2110301(+) (ssbA) [Bacillus cereus strain lycx]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS
Nucleotide
Download Length: 336 bp
>NTDB_id=850411 QTA68_RS10890 WP_000982018.1 2109966..2110301(+) (ssbA) [Bacillus cereus strain lycx]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
95.495 |
0.559 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.66 |
95.495 |
0.532 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.893 |
100 |
0.514 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
45.714 |
94.595 |
0.432 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.636 |
99.099 |
0.432 |
| ssbA | Streptococcus mutans UA159 |
40 |
99.099 |
0.396 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40 |
99.099 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40 |
99.099 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.091 |
99.099 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.091 |
99.099 |
0.387 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.091 |
99.099 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.091 |
99.099 |
0.387 |