NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	QSV38_RS07085	Genome accession	NZ_CP128410
Coordinates	1345042..1345320 (+)	Length	92 a.a.
NCBI ID	WP_289647106.1	Uniprot ID	-
Organism	Streptococcus parasuis strain 7500
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1340042..1350320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSV38_RS07065 (QSV38_07065)	-	1341702..1342043 (+)	342	WP_217374334.1	DUF1033 family protein	-
QSV38_RS07070 (QSV38_07070)	-	1342103..1343053 (-)	951	WP_277845135.1	S66 peptidase family protein	-
QSV38_RS07075 (QSV38_07075)	comYA	1343141..1344091 (+)	951	WP_277845137.1	competence type IV pilus ATPase ComGA	Machinery gene
QSV38_RS07080 (QSV38_07080)	comYB	1344003..1345040 (+)	1038	WP_289649344.1	competence type IV pilus assembly protein ComGB	Machinery gene
QSV38_RS07085 (QSV38_07085)	comYC	1345042..1345320 (+)	279	WP_289647106.1	competence type IV pilus major pilin ComGC	Machinery gene
QSV38_RS07090 (QSV38_07090)	comGD	1345310..1345714 (+)	405	WP_160864045.1	competence type IV pilus minor pilin ComGD	-
QSV38_RS07095 (QSV38_07095)	comGE	1345686..1345979 (+)	294	WP_217374330.1	competence type IV pilus minor pilin ComGE	-
QSV38_RS07100 (QSV38_07100)	comYF	1345966..1346400 (+)	435	WP_024396551.1	competence type IV pilus minor pilin ComGF	Machinery gene
QSV38_RS07105 (QSV38_07105)	comGG	1346378..1346878 (+)	501	WP_277845142.1	competence type IV pilus minor pilin ComGG	-
QSV38_RS07110 (QSV38_07110)	comYH	1346898..1347851 (+)	954	WP_277845144.1	class I SAM-dependent methyltransferase	Machinery gene
QSV38_RS07115 (QSV38_07115)	-	1347901..1349088 (+)	1188	WP_277837563.1	acetate kinase	-
QSV38_RS07120 (QSV38_07120)	-	1349343..1349894 (+)	552	WP_277845146.1	folate family ECF transporter S component	-

Sequence

Protein

Download Length: 92 a.a. Molecular weight: 10528.56 Da Isoelectric Point: 8.4454

                                >NTDB_id=847326 QSV38_RS07085 WP_289647106.1 1345042..1345320(+) (comYC) [Streptococcus parasuis strain 7500]

MKKMLKKKVKGFALVEMLVVLGIISILLLLFVPNLSKQKQKIQEDGNAVVVKVVESQMDIYELEHGVRPTAEELYNQQMI

TVDQLEKYNNVP

Nucleotide

Download Length: 279 bp

                                >NTDB_id=847326 QSV38_RS07085 WP_289647106.1 1345042..1345320(+) (comYC) [Streptococcus parasuis strain 7500]

ATGAAAAAAATGTTGAAAAAGAAAGTCAAAGGATTCGCTTTGGTCGAAATGTTAGTGGTGCTTGGAATTATTAGTATTCT

CTTACTATTATTTGTGCCAAATCTCAGTAAGCAAAAGCAAAAAATACAAGAAGACGGCAATGCGGTGGTTGTAAAAGTTG

TTGAAAGTCAAATGGACATTTACGAATTGGAGCATGGTGTTCGTCCAACAGCGGAAGAATTATATAATCAGCAGATGATA

ACTGTAGATCAACTAGAAAAATATAATAATGTACCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus suis isolate S10	61.538	98.913	0.609
comGC/cglC	Streptococcus mitis SK321	53.763	100	0.543
comGC/cglC	Streptococcus pneumoniae Rx1	53.261	100	0.533
comGC/cglC	Streptococcus mitis NCTC 12261	53.261	100	0.533
comGC/cglC	Streptococcus pneumoniae R6	53.261	100	0.533
comGC/cglC	Streptococcus pneumoniae D39	53.261	100	0.533
comGC/cglC	Streptococcus pneumoniae TIGR4	53.261	100	0.533
comYC	Streptococcus gordonii str. Challis substr. CH1	53.933	96.739	0.522
comGC	Lactococcus lactis subsp. cremoris KW2	53.333	97.826	0.522
comYC	Streptococcus mutans UA140	52.222	97.826	0.511
comYC	Streptococcus mutans UA159	52.222	97.826	0.511
comGC	Bacillus subtilis subsp. subtilis str. 168	45.333	81.522	0.37

Detailed information NTG0847326