Detailed information NTG0847325

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QSV38_RS07080
• Genome accession: NZ_CP128410
• Coordinates: 1344003..1345040 (+)
• Length: 345 a.a.
• NCBI ID: WP_289649344.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 7500
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1339003..1350040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QSV38_RS07065 (QSV38_07065)	-	1341702..1342043 (+)	342	WP_217374334.1	DUF1033 family protein	-
QSV38_RS07070 (QSV38_07070)	-	1342103..1343053 (-)	951	WP_277845135.1	S66 peptidase family protein	-
QSV38_RS07075 (QSV38_07075)	comYA	1343141..1344091 (+)	951	WP_277845137.1	competence type IV pilus ATPase ComGA	Machinery gene
QSV38_RS07080 (QSV38_07080)	comYB	1344003..1345040 (+)	1038	WP_289649344.1	competence type IV pilus assembly protein ComGB	Machinery gene
QSV38_RS07085 (QSV38_07085)	comYC	1345042..1345320 (+)	279	WP_289647106.1	competence type IV pilus major pilin ComGC	Machinery gene
QSV38_RS07090 (QSV38_07090)	comGD	1345310..1345714 (+)	405	WP_160864045.1	competence type IV pilus minor pilin ComGD	-
QSV38_RS07095 (QSV38_07095)	comGE	1345686..1345979 (+)	294	WP_217374330.1	competence type IV pilus minor pilin ComGE	-
QSV38_RS07100 (QSV38_07100)	comYF	1345966..1346400 (+)	435	WP_024396551.1	competence type IV pilus minor pilin ComGF	Machinery gene
QSV38_RS07105 (QSV38_07105)	comGG	1346378..1346878 (+)	501	WP_277845142.1	competence type IV pilus minor pilin ComGG	-
QSV38_RS07110 (QSV38_07110)	comYH	1346898..1347851 (+)	954	WP_277845144.1	class I SAM-dependent methyltransferase	Machinery gene
QSV38_RS07115 (QSV38_07115)	-	1347901..1349088 (+)	1188	WP_277837563.1	acetate kinase	-
QSV38_RS07120 (QSV38_07120)	-	1349343..1349894 (+)	552	WP_277845146.1	folate family ECF transporter S component	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39198.14 Da
• Isoelectric Point: 9.2929

>NTDB_id=847325 QSV38_RS07080 WP_289649344.1 1344003..1345040(+) (comYB) [Streptococcus parasuis strain 7500]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGSVATI
LIQHLPTIFLSFCGLFFLAALGGLIWYHRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=847325 QSV38_RS07080 WP_289649344.1 1344003..1345040(+) (comYB) [Streptococcus parasuis strain 7500]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCGGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGTAAGGTCCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAGTGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGCCTTAGGTGGGCTTATTTGGTA
TCACAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATAT
CCAAACGTATGGTTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGT
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	60.294	98.551	0.594
comYB	Streptococcus mutans UA140	59.531	98.841	0.588
comYB	Streptococcus mutans UA159	59.531	98.841	0.588
comGB/cglB	Streptococcus mitis SK321	59.701	97.101	0.58
comGB/cglB	Streptococcus pneumoniae TIGR4	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae Rx1	59.104	97.101	0.574
comGB/cglB	Streptococcus mitis NCTC 12261	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae D39	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae R6	59.104	97.101	0.574
comGB	Lactococcus lactis subsp. cremoris KW2	51.039	97.681	0.499