Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   QSV38_RS07075 Genome accession   NZ_CP128410
Coordinates   1343141..1344091 (+) Length   316 a.a.
NCBI ID   WP_277845137.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338141..1349091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS07065 (QSV38_07065) - 1341702..1342043 (+) 342 WP_217374334.1 DUF1033 family protein -
  QSV38_RS07070 (QSV38_07070) - 1342103..1343053 (-) 951 WP_277845135.1 S66 peptidase family protein -
  QSV38_RS07075 (QSV38_07075) comYA 1343141..1344091 (+) 951 WP_277845137.1 competence type IV pilus ATPase ComGA Machinery gene
  QSV38_RS07080 (QSV38_07080) comYB 1344003..1345040 (+) 1038 WP_289649344.1 competence type IV pilus assembly protein ComGB Machinery gene
  QSV38_RS07085 (QSV38_07085) comYC 1345042..1345320 (+) 279 WP_289647106.1 competence type IV pilus major pilin ComGC Machinery gene
  QSV38_RS07090 (QSV38_07090) comGD 1345310..1345714 (+) 405 WP_160864045.1 competence type IV pilus minor pilin ComGD -
  QSV38_RS07095 (QSV38_07095) comGE 1345686..1345979 (+) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  QSV38_RS07100 (QSV38_07100) comYF 1345966..1346400 (+) 435 WP_024396551.1 competence type IV pilus minor pilin ComGF Machinery gene
  QSV38_RS07105 (QSV38_07105) comGG 1346378..1346878 (+) 501 WP_277845142.1 competence type IV pilus minor pilin ComGG -
  QSV38_RS07110 (QSV38_07110) comYH 1346898..1347851 (+) 954 WP_277845144.1 class I SAM-dependent methyltransferase Machinery gene
  QSV38_RS07115 (QSV38_07115) - 1347901..1349088 (+) 1188 WP_277837563.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35443.46 Da        Isoelectric Point: 5.7234

>NTDB_id=847324 QSV38_RS07075 WP_277845137.1 1343141..1344091(+) (comYA) [Streptococcus parasuis strain 7500]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRVMDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCEYD
YGSGKISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALEGIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=847324 QSV38_RS07075 WP_277845137.1 1343141..1344091(+) (comYA) [Streptococcus parasuis strain 7500]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTAACCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGAATACGAT
TATGGTTCAGGGAAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGAGGGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CTCGAGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comYA Streptococcus gordonii str. Challis substr. CH1

67.419

98.101

0.661
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.839

98.101

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

63.871

98.101

0.627
  comGA Lactococcus lactis subsp. cremoris KW2

55.346

100

0.557
  comGA Latilactobacillus sakei subsp. sakei 23K

42.238

87.658

0.37