Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | QSV38_RS07110 | Genome accession | NZ_CP128410 |
| Coordinates | 1346898..1347851 (+) | Length | 317 a.a. |
| NCBI ID | WP_277845144.1 | Uniprot ID | - |
| Organism | Streptococcus parasuis strain 7500 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1341898..1352851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QSV38_RS07070 (QSV38_07070) | - | 1342103..1343053 (-) | 951 | WP_277845135.1 | S66 peptidase family protein | - |
| QSV38_RS07075 (QSV38_07075) | comYA | 1343141..1344091 (+) | 951 | WP_277845137.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QSV38_RS07080 (QSV38_07080) | comYB | 1344003..1345040 (+) | 1038 | WP_289649344.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QSV38_RS07085 (QSV38_07085) | comYC | 1345042..1345320 (+) | 279 | WP_289647106.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| QSV38_RS07090 (QSV38_07090) | comGD | 1345310..1345714 (+) | 405 | WP_160864045.1 | competence type IV pilus minor pilin ComGD | - |
| QSV38_RS07095 (QSV38_07095) | comGE | 1345686..1345979 (+) | 294 | WP_217374330.1 | competence type IV pilus minor pilin ComGE | - |
| QSV38_RS07100 (QSV38_07100) | comYF | 1345966..1346400 (+) | 435 | WP_024396551.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| QSV38_RS07105 (QSV38_07105) | comGG | 1346378..1346878 (+) | 501 | WP_277845142.1 | competence type IV pilus minor pilin ComGG | - |
| QSV38_RS07110 (QSV38_07110) | comYH | 1346898..1347851 (+) | 954 | WP_277845144.1 | class I SAM-dependent methyltransferase | Machinery gene |
| QSV38_RS07115 (QSV38_07115) | - | 1347901..1349088 (+) | 1188 | WP_277837563.1 | acetate kinase | - |
| QSV38_RS07120 (QSV38_07120) | - | 1349343..1349894 (+) | 552 | WP_277845146.1 | folate family ECF transporter S component | - |
| QSV38_RS07125 (QSV38_07125) | - | 1349949..1351205 (+) | 1257 | WP_277837598.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| QSV38_RS07130 (QSV38_07130) | pepA | 1351250..1352311 (-) | 1062 | WP_277845148.1 | glutamyl aminopeptidase | - |
| QSV38_RS07135 (QSV38_07135) | - | 1352524..1352808 (+) | 285 | WP_171989715.1 | DUF4651 domain-containing protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35672.95 Da Isoelectric Point: 4.7105
>NTDB_id=847328 QSV38_RS07110 WP_277845144.1 1346898..1347851(+) (comYH) [Streptococcus parasuis strain 7500]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQILRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPYDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQILRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPYDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=847328 QSV38_RS07110 WP_277845144.1 1346898..1347851(+) (comYH) [Streptococcus parasuis strain 7500]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATACAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAATAATC
AAATCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCATATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAGGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATACAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAATAATC
AAATCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCATATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAGGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.494 |
99.685 |
0.593 |
| comYH | Streptococcus mutans UA159 |
59.177 |
99.685 |
0.59 |