Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QSU95_RS14025 Genome accession   NZ_CP128204
Coordinates   2983832..2985556 (-) Length   574 a.a.
NCBI ID   WP_286211333.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2978832..2990556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS14005 (QSU95_14005) - 2979534..2980364 (-) 831 WP_286211331.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QSU95_RS14010 (QSU95_14010) - 2980459..2981967 (-) 1509 WP_286211332.1 AAA family ATPase -
  QSU95_RS14015 (QSU95_14015) aroB 2982013..2983098 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  QSU95_RS14020 (QSU95_14020) aroK 2983126..2983644 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QSU95_RS14025 (QSU95_14025) pilQ 2983832..2985556 (-) 1725 WP_286211333.1 type IV pilus secretin PilQ family protein Machinery gene
  QSU95_RS14030 (QSU95_14030) pilP 2985581..2986093 (-) 513 WP_154180461.1 pilus assembly protein PilP Machinery gene
  QSU95_RS14035 (QSU95_14035) pilO 2986083..2986673 (-) 591 WP_232658224.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSU95_RS14040 (QSU95_14040) pilN 2986666..2987256 (-) 591 WP_055465837.1 PilN domain-containing protein Machinery gene
  QSU95_RS14045 (QSU95_14045) pilM 2987246..2988250 (-) 1005 WP_286211334.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 61940.59 Da        Isoelectric Point: 4.4080

>NTDB_id=846784 QSU95_RS14025 WP_286211333.1 2983832..2985556(-) (pilQ) [Vibrio furnissii strain VFBJ05]
MIKGLNASTAWGIRCLFVGVCLLLSAATFAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATAVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIDVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=846784 QSU95_RS14025 WP_286211333.1 2983832..2985556(-) (pilQ) [Vibrio furnissii strain VFBJ05]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTCGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTTGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATTGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTGGCGTCGGCTTCCGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATTGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGGCGGTGGAAAACATCGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAGAAAGAGGGCAAGCTGATTTCGATTAAC
TTCCAAGACATTCCCGTGCGCAACGTGCTGCAGCTTATCGCCGACTACAACCAGTTCAACTTGGTGGTCTCCGATTCCGT
CAGCGGCAACTTGACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTTAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCGCCCAAAGAGGAACTGGACCGACGCGAGCAGCAGCAATTGGAAAAA
GCGCGCATGGCGGAAGAGCTGGGCGATCTGCAATCGGAAATCATCAAAATCAATTTCGCCAAGGCATCTGACATTGCACA
GATGATCGGTGGGGATGGCGCGGTGAACATGTTGTCAGAGCGCGGCTCCATCAGTATTGATGAGCGCACCAACGCCTTGC
TACTGCGCGAGCTGCCTGACAACATCGACGTGATCCGCGACATCGTGGCCTCTCTCGACATTCCGGTCAAACAAGTGCAA
ATCGAAGCGCGTATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGCTCCACCAATGG
GAGCACCACGACCGGGGGGTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGCGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTCGCCGCCACCTCCGCCAATGCATCCAGTATTGCGTTTCAAGTAGCC
AAGCTGGGCGCTGACACCTTGCTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGGCTGATCACCACCAACAAACAGCCTGCTTATATTGAACAGGGGACGGAAATCCCTTATCTCGAATCGTCCTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTGACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAAGTACCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGCAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Secretin and TonB N terminus short domain (STN)

(179-227)

Bacterial type II and III secretion system protein (Secretin)

(414-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

80.729

100

0.81
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.729

100

0.81
  pilQ Vibrio campbellii strain DS40M4

77.413

95.645

0.74
  pilQ Pseudomonas aeruginosa PAK

40.035

99.652

0.399
  comQ Acinetobacter baylyi ADP1

38.908

100

0.397
  pilQ Legionella pneumophila strain ERS1305867

41.575

95.122

0.395
  pilQ Legionella pneumophila strain Lp02

41.575

95.122

0.395
  pilQ Acinetobacter baumannii D1279779

37.285

100

0.378
  pilQ Acinetobacter baumannii strain A118

37.285

100

0.378