Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QSU95_RS14035 Genome accession   NZ_CP128204
Coordinates   2986083..2986673 (-) Length   196 a.a.
NCBI ID   WP_232658224.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2981083..2991673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS14015 (QSU95_14015) aroB 2982013..2983098 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  QSU95_RS14020 (QSU95_14020) aroK 2983126..2983644 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QSU95_RS14025 (QSU95_14025) pilQ 2983832..2985556 (-) 1725 WP_286211333.1 type IV pilus secretin PilQ family protein Machinery gene
  QSU95_RS14030 (QSU95_14030) pilP 2985581..2986093 (-) 513 WP_154180461.1 pilus assembly protein PilP Machinery gene
  QSU95_RS14035 (QSU95_14035) pilO 2986083..2986673 (-) 591 WP_232658224.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSU95_RS14040 (QSU95_14040) pilN 2986666..2987256 (-) 591 WP_055465837.1 PilN domain-containing protein Machinery gene
  QSU95_RS14045 (QSU95_14045) pilM 2987246..2988250 (-) 1005 WP_286211334.1 type IV pilus assembly protein PilM Machinery gene
  QSU95_RS14050 (QSU95_14050) - 2988394..2990874 (+) 2481 WP_038152617.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22735.99 Da        Isoelectric Point: 5.0705

>NTDB_id=846786 QSU95_RS14035 WP_232658224.1 2986083..2986673(-) (pilO) [Vibrio furnissii strain VFBJ05]
MANVHDLELDEISEWPLVAQLVALVLLVLVLQGAGYWFYLQPKQDTLAARKQQEQTLKSTIRIKASKVATLPKLKIQLDE
LAQRYDFLLRQLPVQKELASMLASVNELGLDNSLTFTRIDWGEKQNQQFLYRLPLNIELTGNYHDIGDFSEAIARLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDEQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=846786 QSU95_RS14035 WP_232658224.1 2986083..2986673(-) (pilO) [Vibrio furnissii strain VFBJ05]
ATGGCTAACGTACACGATCTGGAACTGGACGAAATCAGCGAATGGCCGTTGGTGGCTCAATTGGTGGCCTTGGTGCTGCT
GGTGTTGGTGTTGCAGGGCGCGGGATACTGGTTCTATTTGCAGCCTAAACAAGACACATTGGCCGCACGCAAGCAGCAAG
AACAAACGCTGAAGTCGACGATTCGCATCAAAGCCAGCAAAGTCGCGACATTGCCGAAGCTCAAGATTCAGCTGGATGAA
CTGGCACAGCGGTACGACTTCCTGTTGCGTCAGCTGCCGGTGCAAAAAGAGCTCGCCAGCATGTTGGCGTCGGTGAACGA
GTTGGGGCTCGACAACAGCTTGACCTTTACTCGCATCGACTGGGGAGAAAAGCAGAATCAGCAATTTCTCTATCGGCTGC
CGCTCAATATCGAATTGACCGGTAATTATCACGACATCGGCGATTTTTCTGAAGCGATCGCGCGTCTACCGCGCATCATT
AATTTTGACGACGTTGACTGGCAGCGCGTCAGCCAAGAGAGCAGCACGCTCCATTTCCGCGTTCGCGCCTATACCTATCA
GTTCAAACCGGAGGTCAGTGATGAACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

78.061

100

0.781
  pilO Vibrio campbellii strain DS40M4

70.526

96.939

0.684