Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSU95_RS14040 Genome accession   NZ_CP128204
Coordinates   2986666..2987256 (-) Length   196 a.a.
NCBI ID   WP_055465837.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2981666..2992256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS14015 (QSU95_14015) aroB 2982013..2983098 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  QSU95_RS14020 (QSU95_14020) aroK 2983126..2983644 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QSU95_RS14025 (QSU95_14025) pilQ 2983832..2985556 (-) 1725 WP_286211333.1 type IV pilus secretin PilQ family protein Machinery gene
  QSU95_RS14030 (QSU95_14030) pilP 2985581..2986093 (-) 513 WP_154180461.1 pilus assembly protein PilP Machinery gene
  QSU95_RS14035 (QSU95_14035) pilO 2986083..2986673 (-) 591 WP_232658224.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSU95_RS14040 (QSU95_14040) pilN 2986666..2987256 (-) 591 WP_055465837.1 PilN domain-containing protein Machinery gene
  QSU95_RS14045 (QSU95_14045) pilM 2987246..2988250 (-) 1005 WP_286211334.1 type IV pilus assembly protein PilM Machinery gene
  QSU95_RS14050 (QSU95_14050) - 2988394..2990874 (+) 2481 WP_038152617.1 PBP1A family penicillin-binding protein -
  QSU95_RS14055 (QSU95_14055) oxyR 2990961..2991857 (-) 897 WP_014204332.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22028.16 Da        Isoelectric Point: 8.9883

>NTDB_id=846787 QSU95_RS14040 WP_055465837.1 2986666..2987256(-) (pilN) [Vibrio furnissii strain VFBJ05]
MVHDINLMPWREARREAHKRRFAGLCVLAVLAALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDNQIAALKVTEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=846787 QSU95_RS14040 WP_055465837.1 2986666..2987256(-) (pilN) [Vibrio furnissii strain VFBJ05]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGCGAAGCCCATAAACGCCGTTTTGCCGGTTTGTGCGT
GCTGGCGGTGCTGGCCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACGCAAGTGCAGCAGCAAC
GGCTGGATTTTCTCAACCAACACATTCGTGACTTAGACAACCAAATTGCGGCGCTGAAGGTGACCGAGCAAGAGCATAAG
GCGTTGTTGACCCGTTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGCAACAAGACCACTGAGTTCATGAACTTGATGCC
CCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGTATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCGTCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.543

100

0.699
  pilN Vibrio campbellii strain DS40M4

63.388

93.367

0.592