Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QRD86_RS19110 Genome accession   NZ_CP128116
Coordinates   3633971..3634312 (-) Length   113 a.a.
NCBI ID   WP_024123111.1    Uniprot ID   A0A9Q4HR41
Organism   Bacillus halotolerans strain KF17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3628971..3639312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS19095 (QRD86_19090) - 3629208..3631982 (+) 2775 WP_101859829.1 DEAD/DEAH box helicase -
  QRD86_RS19100 (QRD86_19095) - 3632105..3632962 (-) 858 WP_127696397.1 Cof-type HAD-IIB family hydrolase -
  QRD86_RS19105 (QRD86_19100) - 3632968..3633744 (-) 777 WP_106019942.1 DeoR/GlpR family DNA-binding transcription regulator -
  QRD86_RS19110 (QRD86_19105) ssbB 3633971..3634312 (-) 342 WP_024123111.1 single-stranded DNA-binding protein SsbB Machinery gene
  QRD86_RS19115 (QRD86_19110) - 3634390..3634773 (-) 384 WP_024123112.1 hypothetical protein -
  QRD86_RS19120 (QRD86_19115) - 3634949..3635359 (+) 411 WP_059292379.1 YwpF-like family protein -
  QRD86_RS19125 (QRD86_19120) blaOXA 3635411..3636214 (+) 804 WP_101859828.1 class D beta-lactamase -
  QRD86_RS19130 (QRD86_19125) mscL 3636246..3636638 (-) 393 WP_024123115.1 large conductance mechanosensitive channel protein MscL -
  QRD86_RS19135 (QRD86_19130) fabZ 3636710..3637135 (-) 426 WP_024123116.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRD86_RS19140 (QRD86_19135) - 3637329..3638393 (+) 1065 WP_024123117.1 tetratricopeptide repeat protein -
  QRD86_RS19145 (QRD86_19140) - 3638415..3639224 (-) 810 WP_106021924.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12566.32 Da        Isoelectric Point: 8.4667

>NTDB_id=846066 QRD86_RS19110 WP_024123111.1 3633971..3634312(-) (ssbB) [Bacillus halotolerans strain KF17]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGLSGRIQTR
SYENAEGVKVYVTEVMADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=846066 QRD86_RS19110 WP_024123111.1 3633971..3634312(-) (ssbB) [Bacillus halotolerans strain KF17]
ATGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCTGCAGGCGCGGCAGTCAC
ACACATTACGATTGCAGTTAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCGGATTACGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTTGGCCTAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGATACTGTTCGTTTTATGGACCCTAAACC
TCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

92.92

100

0.929
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.264

93.805

0.584
  ssb Latilactobacillus sakei subsp. sakei 23K

57.547

93.805

0.54
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.222

95.575

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae D39

42.593

95.575

0.407
  ssbB/cilA Streptococcus pneumoniae R6

42.593

95.575

0.407
  ssbB/cilA Streptococcus mitis SK321

42.593

95.575

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40

92.92

0.372