Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QSG85_RS01455 Genome accession   NZ_CP127906
Coordinates   313976..314617 (+) Length   213 a.a.
NCBI ID   WP_042051785.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 308976..319617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01435 (QSG85_01435) - 309024..309356 (+) 333 WP_000169602.1 hypothetical protein -
  QSG85_RS01440 (QSG85_01440) - 309359..310183 (+) 825 WP_153560889.1 putative RNA methyltransferase -
  QSG85_RS01445 (QSG85_01445) ponA 310201..312756 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  QSG85_RS01450 (QSG85_01450) pilM 312918..313976 (+) 1059 WP_032008759.1 pilus assembly protein PilM Machinery gene
  QSG85_RS01455 (QSG85_01455) pilN 313976..314617 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  QSG85_RS01460 (QSG85_01460) pilO 314614..315354 (+) 741 WP_032008755.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG85_RS01465 (QSG85_01465) pilP 315365..315892 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QSG85_RS01470 (QSG85_01470) pilQ 315955..318120 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG85_RS01475 (QSG85_01475) aroK 318132..318701 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=845149 QSG85_RS01455 WP_042051785.1 313976..314617(+) (pilN) [Acinetobacter baumannii strain SAAb472]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSAGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=845149 QSG85_RS01455 WP_042051785.1 313976..314617(+) (pilN) [Acinetobacter baumannii strain SAAb472]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTGCAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704