Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QSG85_RS01460 Genome accession   NZ_CP127906
Coordinates   314614..315354 (+) Length   246 a.a.
NCBI ID   WP_032008755.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309614..320354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01445 (QSG85_01445) ponA 310201..312756 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  QSG85_RS01450 (QSG85_01450) pilM 312918..313976 (+) 1059 WP_032008759.1 pilus assembly protein PilM Machinery gene
  QSG85_RS01455 (QSG85_01455) pilN 313976..314617 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  QSG85_RS01460 (QSG85_01460) pilO 314614..315354 (+) 741 WP_032008755.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG85_RS01465 (QSG85_01465) pilP 315365..315892 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QSG85_RS01470 (QSG85_01470) pilQ 315955..318120 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG85_RS01475 (QSG85_01475) aroK 318132..318701 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QSG85_RS01480 (QSG85_01480) aroB 318730..319812 (+) 1083 WP_032008749.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.64 Da        Isoelectric Point: 4.8357

>NTDB_id=845150 QSG85_RS01460 WP_032008755.1 314614..315354(+) (pilO) [Acinetobacter baumannii strain SAAb472]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLIEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=845150 QSG85_RS01460 WP_032008755.1 314614..315354(+) (pilO) [Acinetobacter baumannii strain SAAb472]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAATCGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

68.724

98.78

0.679