Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QSG85_RS01465 Genome accession   NZ_CP127906
Coordinates   315365..315892 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 310365..320892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01450 (QSG85_01450) pilM 312918..313976 (+) 1059 WP_032008759.1 pilus assembly protein PilM Machinery gene
  QSG85_RS01455 (QSG85_01455) pilN 313976..314617 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  QSG85_RS01460 (QSG85_01460) pilO 314614..315354 (+) 741 WP_032008755.1 type 4a pilus biogenesis protein PilO Machinery gene
  QSG85_RS01465 (QSG85_01465) pilP 315365..315892 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  QSG85_RS01470 (QSG85_01470) pilQ 315955..318120 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  QSG85_RS01475 (QSG85_01475) aroK 318132..318701 (+) 570 WP_000643712.1 shikimate kinase AroK -
  QSG85_RS01480 (QSG85_01480) aroB 318730..319812 (+) 1083 WP_032008749.1 3-dehydroquinate synthase -
  QSG85_RS01485 (QSG85_01485) - 319828..320703 (+) 876 WP_000218798.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=845151 QSG85_RS01465 WP_000695065.1 315365..315892(+) (pilP) [Acinetobacter baumannii strain SAAb472]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=845151 QSG85_RS01465 WP_000695065.1 315365..315892(+) (pilP) [Acinetobacter baumannii strain SAAb472]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTTTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714