Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QP552_RS16375 Genome accession   NZ_CP127408
Coordinates   3545665..3546924 (+) Length   419 a.a.
NCBI ID   WP_106549567.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540665..3551924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP552_RS16355 pilR 3540835..3542208 (+) 1374 WP_286074071.1 sigma-54 dependent transcriptional regulator Regulator
  QP552_RS16360 pilB 3542353..3544086 (-) 1734 WP_286074072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QP552_RS16365 pilA/pilAI 3544309..3544716 (-) 408 WP_286074073.1 pilin Machinery gene
  QP552_RS16370 - 3544871..3545311 (-) 441 WP_106549568.1 pilin -
  QP552_RS16375 pilC 3545665..3546924 (+) 1260 WP_106549567.1 type II secretion system F family protein Machinery gene
  QP552_RS16380 - 3546932..3547795 (+) 864 WP_049429911.1 A24 family peptidase -
  QP552_RS16385 coaE 3547807..3548418 (+) 612 WP_286074074.1 dephospho-CoA kinase -
  QP552_RS16390 - 3548589..3549956 (-) 1368 WP_099553741.1 HAMP domain-containing sensor histidine kinase -
  QP552_RS16395 - 3549919..3550596 (-) 678 WP_005410804.1 response regulator transcription factor -
  QP552_RS16400 - 3550605..3551075 (-) 471 WP_005410805.1 hypothetical protein -
  QP552_RS16405 - 3551165..3551641 (-) 477 WP_286074075.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45870.32 Da        Isoelectric Point: 10.1706

>NTDB_id=844152 QP552_RS16375 WP_106549567.1 3545665..3546924(+) (pilC) [Stenotrophomonas sp. 59]
MSVSRSAIKKEPVARATIELQPFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGASGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=844152 QP552_RS16375 WP_106549567.1 3545665..3546924(+) (pilC) [Stenotrophomonas sp. 59]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATTGAGCTGCAGCCGTTTGTCTGGGTGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCTCCGGCAGCCCGGTCAAGCCGAAGGAC
ATCGCCTTCTTCAGTCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTGTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATAGTGGTGGGCTCCGCTGTCGGTGCCATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAATACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.695

96.897

0.52
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

49.874

94.749

0.473
  pilG Neisseria gonorrhoeae MS11

43.97

94.988

0.418
  pilG Neisseria meningitidis 44/76-A

43.609

95.227

0.415
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36