Detailed information NTG0844149

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QP552_RS16355
• Genome accession: NZ_CP127408
• Coordinates: 3540835..3542208 (+)
• Length: 457 a.a.
• NCBI ID: WP_286074071.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. 59
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3535835..3547208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP552_RS16340	sucD	3536737..3537612 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
QP552_RS16345	sucC	3537634..3538803 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
QP552_RS16350	-	3539161..3540774 (+)	1614	WP_049427898.1	ATP-binding protein	-
QP552_RS16355	pilR	3540835..3542208 (+)	1374	WP_286074071.1	sigma-54 dependent transcriptional regulator	Regulator
QP552_RS16360	pilB	3542353..3544086 (-)	1734	WP_286074072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QP552_RS16365	pilA/pilAI	3544309..3544716 (-)	408	WP_286074073.1	pilin	Machinery gene
QP552_RS16370	-	3544871..3545311 (-)	441	WP_106549568.1	pilin	-
QP552_RS16375	pilC	3545665..3546924 (+)	1260	WP_106549567.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49575.81 Da
• Isoelectric Point: 6.4407

>NTDB_id=844149 QP552_RS16355 WP_286074071.1 3540835..3542208(+) (pilR) [Stenotrophomonas sp. 59]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTISKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRTPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=844149 QP552_RS16355 WP_286074071.1 3540835..3542208(+) (pilR) [Stenotrophomonas sp. 59]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTTGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTCGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCCGTGGAGGCGCTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGATATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCAGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTTGGCCACTCACAGGCCATGGATGTGCTGCGCACCACCATCAGCAAGGTCGCGCGCAGC
CAGGCACCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCGCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGGGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCCGAA
CTGGCCGCGGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
GCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTACGCCGGGCAGTGCCGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.335	99.344	0.619
pilR	Acinetobacter baumannii strain A118	47.948	100	0.486